RNA id: TU21243



Basic Information


Item Value
RNA id TU21243
length 257
lncRNA type intronic
GC content 0.34
exon number 1
gene id G18190
representative True

Chromosome Information


Item Value
chromosome id NC_048565.1
NCBI id CM023219.2
chromosome length 95772356
location 19079934 ~ 19080190 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence


cttaaagaagaagttacaggtctgtgagagccagaaatcttgcttgtttgtaggtgaccaaatacttattttccaccataatttgcaaaaaaattaattgaaaatcctacaatgtgattttctggattttttttctcagtttgtctgtcatagttgaagtgtacctatgatgaaaattacaggcctctctcatctgtttaagtgggagaacttgcacaattggtgtttgactaaatactttttttgccccactgtat

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU21242 lncRNA downstream 117 19079594 ~ 19079817 (-) True G18189
TU21229 lncRNA downstream 4312 19075170 ~ 19075622 (-) True G18178
TU21232 lncRNA downstream 8078 19070093 ~ 19071856 (-) True c1h19orf44
TU21192 lncRNA downstream 34939 19044706 ~ 19044995 (-) True G18141
TU21220 lncRNA downstream 36972 19042069 ~ 19042962 (-) True G18169
TU21252 lncRNA upstream 1579 19081769 ~ 19082501 (-) False G18192
TU21251 lncRNA upstream 1904 19082094 ~ 19082501 (-) False G18192
TU21250 lncRNA upstream 1940 19082130 ~ 19082501 (-) True G18192
TU21253 lncRNA upstream 3314 19083504 ~ 19083744 (-) True G18193
TU21246 lncRNA upstream 4021 19084211 ~ 19087584 (-) False G18191
XM_036961982.1 mRNA downstream 9441 19064745 ~ 19070493 (-) False c1h19orf44
XM_021578124.2 mRNA downstream 10892 19064745 ~ 19069042 (-) False c1h19orf44
XM_021578727.2 mRNA upstream 48393 19128583 ~ 19131233 (-) True LOC110501271
XM_036962687.1 mRNA upstream 229515 19309705 ~ 19328997 (-) False LOC110501398
XM_021578979.2 mRNA upstream 229515 19309705 ~ 19334685 (-) False LOC110501398
XM_036962613.1 mRNA upstream 229515 19309705 ~ 19334685 (-) True LOC110501398
XM_036943822.1 mRNA upstream 260218 19340408 ~ 19342021 (-) False fam32a
TU21090 other downstream 194282 18876877 ~ 18885652 (-) True mydgf
TU20791 other downstream 685074 18391632 ~ 18394860 (-) True LOC110497762
TU20793 other downstream 688401 18390123 ~ 18391533 (-) False LOC110497762
TU19908 other downstream 984996 18089880 ~ 18094938 (-) False LOC110497564
TU21902 other upstream 550303 19630493 ~ 19632617 (-) True LOC110502937
TU23634 other upstream 1718930 20799120 ~ 20800008 (-) True G20266
TU23821 other upstream 2005108 21085298 ~ 21089250 (-) False LOC118945319
TU23826 other upstream 2005108 21085298 ~ 21089250 (-) False LOC118945319
TU23814 other upstream 2005278 21085468 ~ 21089250 (-) False LOC118945319

Expression Profile