RNA id: TU21251


Basic Information

Item Value
RNA id TU21251
length 408
lncRNA type antisense_over
GC content 0.44
exon number 1
gene id G18192
representative False

Chromosome Information

Item Value
chromosome id NC_048565.1
NCBI id CM023219.2
chromosome length 95772356
location 19081769 ~ 19082501 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

gaggaggagagggctggTGGTGTAGCAAAAGGCTGTTCAGGGTGCTCCCCCTCAGGCTTTACCTCTGAGAGGGAGGATGCTGCTGCAGCTGGGGCTGCACTCGTCCCCAGGGCTGCAGGGGGAAAAGAAGCAGGGGCTGGTACAGGGGGTGTGAAGAACTCCACTGCTTGTGTGAGgcttgaggtaggggcaggtgtGGATGTTGGGGACAGGGTGGAGATCTCCATGGGGGCAGGGGATGAGGTAGGTCGGGCAATGTCAGAGAGGGACAACCCAGAAACAGCAGGAGGTGCAGGGGCAGGAGCAGGGGTAGAGGCTGGGGCTGCCAGAGGAGAAATCTGTGGAGTAGCTGGAGGTTTGGGCTGTAGGGAGACAACAAACAAGACTGCCCAGAGATGACCACTGTGA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU21243 lncRNA downstream 1904 19079934 ~ 19080190 (-) True G18190
TU21242 lncRNA downstream 2277 19079594 ~ 19079817 (-) True G18189
TU21229 lncRNA downstream 6472 19075170 ~ 19075622 (-) True G18178
TU21232 lncRNA downstream 10238 19070093 ~ 19071856 (-) True c1h19orf44
TU21192 lncRNA downstream 37099 19044706 ~ 19044995 (-) True G18141
TU21253 lncRNA upstream 1003 19083504 ~ 19083744 (-) True G18193
TU21246 lncRNA upstream 1710 19084211 ~ 19087584 (-) False G18191
TU21247 lncRNA upstream 1710 19084211 ~ 19087816 (-) False G18191
TU21249 lncRNA upstream 2246 19084747 ~ 19087816 (-) True G18191
TU21260 lncRNA upstream 12531 19095032 ~ 19096204 (-) True G18199
XM_036961982.1 mRNA downstream 11601 19064745 ~ 19070493 (-) False c1h19orf44
XM_021578124.2 mRNA downstream 13052 19064745 ~ 19069042 (-) False c1h19orf44
XM_021578727.2 mRNA upstream 46082 19128583 ~ 19131233 (-) True LOC110501271
XM_036962687.1 mRNA upstream 227204 19309705 ~ 19328997 (-) False LOC110501398
XM_021578979.2 mRNA upstream 227204 19309705 ~ 19334685 (-) False LOC110501398
XM_036962613.1 mRNA upstream 227204 19309705 ~ 19334685 (-) True LOC110501398
XM_036943822.1 mRNA upstream 257907 19340408 ~ 19342021 (-) False fam32a
TU21090 other downstream 196442 18876877 ~ 18885652 (-) True mydgf
TU20791 other downstream 687234 18391632 ~ 18394860 (-) True LOC110497762
TU20793 other downstream 690561 18390123 ~ 18391533 (-) False LOC110497762
TU19908 other downstream 987156 18089880 ~ 18094938 (-) False LOC110497564
TU21902 other upstream 547992 19630493 ~ 19632617 (-) True LOC110502937
TU23634 other upstream 1716619 20799120 ~ 20800008 (-) True G20266
TU23821 other upstream 2002797 21085298 ~ 21089250 (-) False LOC118945319
TU23826 other upstream 2002797 21085298 ~ 21089250 (-) False LOC118945319
TU23814 other upstream 2002967 21085468 ~ 21089250 (-) False LOC118945319

Expression Profile