RNA id: TU21246


Basic Information

Item Value
RNA id TU21246
length 2311
lncRNA type antisense_over
GC content 0.32
exon number 2
gene id G18191
representative False

Chromosome Information

Item Value
chromosome id NC_048565.1
NCBI id CM023219.2
chromosome length 95772356
location 19084211 ~ 19087816 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

AAACATTCAGCAAACCTTCAAGTGGTGCATTTAAGGCTAAATCCCTATGCATTATTGTAGTTTCAAATAAGAAAAAACAAAAAgttaaacaacaaaacaaaatgaTAAAAATCAATATCATCACTCCTGTGGTTCCACAGCATGCCATAGCTCAGCTTAAGTCTGTTATAAAACTCAtgcaatcaaccaaccaacctacATCGCTCAGAGCAACAGTCTTCACAATAAAGAGGCTTATTTTGCAAAAGCTGAAATCAACTCCATGTACATTATGATACAGAAAGTCAGCTGGGTCAATCTTTCTCGTCTACACACAAGAAAAAAGAAAAAGCAGAGGCCTGTGTTGCGTGTTGTTCACACAAAACTGGGTGGTTTCTAGCACTTCCAGAACTTCACTGCACTTTTAACACCCTTTATAGGATGGCTGTTTGATTATGATAGTCAATATAAATCCTATGGCACTCATCTATGAATAattaaaatacacattttgaCTAACCATGGACCTATAAaacaatctgtacacaatttTGCACAAACAAACAATTAATCTTCAACAAAATGAGACTAACCTCAAGGCATGGTAGAGTGGATAAAAAAAACGTACAGCATGATTTATTTTGACATGATACATTAAGGATCAGGGGCAATCAAAACACACAAGAAAGTGTTCAGGGAGAACAGAATTAGGTGTGCATAACATGCTTATGAAATAATAACAAAGGGCTCAAactaaaaaatcaaatcaaaatatagaggaaaactctcttggtaaatagtgtggtctacagcttatcattagAACTAGCTTTCAAGTGTTGAGCAAGTATTTGTAAAAAACAACTATGTTGCTCAAACGTCATTTAGTGCAGTCATAtggtaccttacagtgaaactaCACTGGGACACATCTGGAAccatgctgctactctctgttttccatatatgcatagtcactttaactatacattcatgtacatactacctcaattagcccgactaaccggtgcccccgcacattggctactggactatctgcattgtgtcccgccacccgccaacccctctttttcgctactgctactctctgttcatcatacttgcatagtcacattaaccatatctacatgtacatactacctcaatcagcccgactaaccggtgcctgtatatagcctcactactgttatagcctcactactgttattattcactgtctttcattgttgttttttatttccttacttatctattgttAACCTAATACCTATTTTCTACACTGATGGTTAGGGcctgtaactaagcatttcactctaaggttgtattcggcacacgtgacaaataaactttgaattTATTTGATCTGAAATCCAGGATTACTCATCATGTCTCATCTTACAGTGAAACTACACTGGGACACATCTGGAACCAAATCCAGGATTTCTCTTTATGTCTCATCTTACAGTGTTATCACATTTCAATATCAATAACATAACTTCCTTatcttttacacaaatgattatACATAAACAATAGCAACATTAATTCTGTAAAAGTAAAATAAAGTGCCAAAATAACTTTCCAACATTGATATGACATTTAATTTACAAAATATCTGAGTTACCTTTatatgaaaaaacaaacaataaacaagtTCCATGGCCATTTTGCTGGTTTTGTCACTTTATCACGGGAAACTCAAGTATATTCTCCCAAGAGTTGAGGCCCACATAGCAAACACAAATCAAAGTATGTTTGGGGTTTCCTTTAAGAGAGGTTGAAAAGCAATATATGGTGAGGCAAACATCCACTGTAACTCTATGGATGGACACGGCACAAGCAGCAGTGATAACAGCAGTgatagcagcagtaatagcagcagtgatagcagcagtGATAGCAGCAGTAATAACAGCAGTGATAGCAGCAGTgatagcagcagtaatagcagcagtgatagcagcagtaatagcagcagtgATAGCAGCAGTAATGGCAGCAGTGAGCAAGAGAGACCACTGAGAGCTAACATACTCAGAGAGAATGGAGAAGGCATAGCTTACAGTAACTAAACATCACGTCTTTGTCCAATGACAAGTCACTTTTGGTAACCTTTTCCACTCCTTCCTTCCAAATCACATTTTGTAGCACTATCACTCGTTCTCTAGCCCTCCATTCTTCCCCTTCATGCTGACGCATGCACATTCACTCGTCATCAAATGTTTGTTGGAGCAGGAAATTAGCAGCTAAATTCTCGTTCTTCTCACATGCGAAATATGCTTGAATGACAAGTCCCTCTGGAAATCCCAAG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU21253 lncRNA downstream 467 19083504 ~ 19083744 (-) True G18193
TU21252 lncRNA downstream 1710 19081769 ~ 19082501 (-) False G18192
TU21251 lncRNA downstream 1710 19082094 ~ 19082501 (-) False G18192
TU21250 lncRNA downstream 1710 19082130 ~ 19082501 (-) True G18192
TU21243 lncRNA downstream 4021 19079934 ~ 19080190 (-) True G18190
TU21260 lncRNA upstream 7448 19095032 ~ 19096204 (-) True G18199
TU21296 lncRNA upstream 69624 19157208 ~ 19157419 (-) True G18234
TU21298 lncRNA upstream 70701 19158285 ~ 19158548 (-) True G18236
TU21736 lncRNA upstream 170998 19258582 ~ 19258860 (-) True G18646
TU21796 lncRNA upstream 249461 19337045 ~ 19338926 (-) True G18700
XM_036961982.1 mRNA downstream 13718 19064745 ~ 19070493 (-) False c1h19orf44
XM_021578124.2 mRNA downstream 15169 19064745 ~ 19069042 (-) False c1h19orf44
XM_021578727.2 mRNA upstream 40999 19128583 ~ 19131233 (-) True LOC110501271
XM_036962687.1 mRNA upstream 222121 19309705 ~ 19328997 (-) False LOC110501398
XM_021578979.2 mRNA upstream 222121 19309705 ~ 19334685 (-) False LOC110501398
XM_036962613.1 mRNA upstream 222121 19309705 ~ 19334685 (-) True LOC110501398
XM_036943822.1 mRNA upstream 252824 19340408 ~ 19342021 (-) False fam32a
TU21090 other downstream 198559 18876877 ~ 18885652 (-) True mydgf
TU20791 other downstream 689351 18391632 ~ 18394860 (-) True LOC110497762
TU20793 other downstream 692678 18390123 ~ 18391533 (-) False LOC110497762
TU19908 other downstream 989273 18089880 ~ 18094938 (-) False LOC110497564
TU21902 other upstream 542909 19630493 ~ 19632617 (-) True LOC110502937
TU23634 other upstream 1711536 20799120 ~ 20800008 (-) True G20266
TU23821 other upstream 1997714 21085298 ~ 21089250 (-) False LOC118945319
TU23826 other upstream 1997714 21085298 ~ 21089250 (-) False LOC118945319
TU23814 other upstream 1997884 21085468 ~ 21089250 (-) False LOC118945319

Expression Profile