RNA id: TU21955


Basic Information

Item Value
RNA id TU21955
length 1024
lncRNA type inter_gene
GC content 0.50
exon number 1
gene id G18853
representative True

Chromosome Information

Item Value
chromosome id NC_048565.1
NCBI id CM023219.2
chromosome length 95772356
location 19563382 ~ 19564405 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

agaaaggcctctttagtgtcctaacttTTCCTAACTGTGTTCTTAATTTCCTACTGTCCGTAAGCTGccagtgtcttaacgaccgttccacaggtgcatgttcattaattgttcatagttaattgaacaagcatgggaaacagttgtttaaaccctttacaatgaagatttatgaagttatttagatttttacgaattatctttgaaagacaggatcctgaaaaagggataTTTCTTTTCTTGCTGAGTTTATTTCCATCTGCATAGCACCATCTGAAGAAACTAAAATGAGCCTATTTTGGACAAATCCAGGTAGTGACTCTGGGTTTAAGTAAAGGTTCTTCAggttggtgcctaatgaacatgatccAGGAcaattttatttcagctttatttcaccaggtaggccagttgagaacaggttttcatttacaactgtgacctggccaagataaagcaaagcagtgggacaaaaacaacaacagagatgcacatgggattaacaaacgtacagttaaaaacacaatataaaatatatgtactgtgtgtgcaaatgtggTACGGTTAGGGAGGTaagtagtggcgaaataattacaatttagcattaacactggagtgagatgtgcagatgatgatgtgcaagtagagatactggggtgcaaaagagcaaaaaaattaataacaatatggggatgaggtgctatttacagatgggctgtgtacaggtacagtgatcggtaagctgctctgacagctgatgcttaaagtttgtgagggagatatgtctccagcttaAGTGATTTTGGAATTCATTCCAGTAAtaagcagcagagaactggaaggaaaggcagccaaaggaggtgttggctttggggatgaccagggaaatatacctgctgaatcgcatgctatgggtgggtatttctatggtgaacagtgagctgagataaggcggggctttacctagcaaagaccttaaagatgacctagagccagtaggtttggcgacgaatatgtagcgagg

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU21954 lncRNA downstream 1647 19561526 ~ 19561735 (-) True G18852
TU21899 lncRNA downstream 24664 19536427 ~ 19538718 (-) False LOC110502382
TU21900 lncRNA downstream 24664 19536427 ~ 19538718 (-) True LOC110502382
TU21927 lncRNA downstream 60835 19502234 ~ 19502547 (-) True G18825
TU21817 lncRNA downstream 191817 19370456 ~ 19371565 (-) True G18720
TU21968 lncRNA upstream 18847 19583252 ~ 19583669 (-) True G18865
TU22007 lncRNA upstream 86754 19651159 ~ 19656415 (-) True G18895
TU22018 lncRNA upstream 96948 19661353 ~ 19663906 (-) False G18904
TU22022 lncRNA upstream 96948 19661353 ~ 19662002 (-) False G18904
TU22019 lncRNA upstream 97703 19662108 ~ 19663906 (-) True G18904
XM_021580480.2 mRNA downstream 24600 19536427 ~ 19538782 (-) False LOC110502382
XM_021580403.2 mRNA downstream 24612 19536929 ~ 19538770 (-) False LOC110502382
XM_021579881.2 mRNA downstream 80059 19474588 ~ 19483323 (-) True LOC110501969
XM_021579773.2 mRNA downstream 99144 19454043 ~ 19464238 (-) True LOC110501773
XM_021579701.2 mRNA downstream 99145 19452917 ~ 19464237 (-) False LOC110501773
XM_021581178.2 mRNA upstream 40759 19605164 ~ 19620194 (-) True LOC110502819
XM_021581383.2 mRNA upstream 65971 19630376 ~ 19633032 (-) False LOC110502937
XM_021581428.2 mRNA upstream 65971 19630376 ~ 19633033 (-) False LOC110502937
XM_021581316.2 mRNA upstream 65971 19630376 ~ 19633058 (-) False LOC110502937
XM_021581734.2 mRNA upstream 168464 19732869 ~ 19743641 (-) True LOC110503352
TU21090 other downstream 677730 18876877 ~ 18885652 (-) True mydgf
TU20791 other downstream 1168522 18391632 ~ 18394860 (-) True LOC110497762
TU20793 other downstream 1171849 18390123 ~ 18391533 (-) False LOC110497762
TU19908 other downstream 1468444 18089880 ~ 18094938 (-) False LOC110497564
TU21902 other upstream 66088 19630493 ~ 19632617 (-) True LOC110502937
TU23634 other upstream 1234715 20799120 ~ 20800008 (-) True G20266
TU23821 other upstream 1520893 21085298 ~ 21089250 (-) False LOC118945319
TU23826 other upstream 1520893 21085298 ~ 21089250 (-) False LOC118945319
TU23814 other upstream 1521063 21085468 ~ 21089250 (-) False LOC118945319

Expression Profile