RNA id: TU22007


Basic Information

Item Value
RNA id TU22007
length 538
lncRNA type antisense_over
GC content 0.35
exon number 4
gene id G18895
representative True

Chromosome Information

Item Value
chromosome id NC_048565.1
NCBI id CM023219.2
chromosome length 95772356
location 19651159 ~ 19656415 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

GGACAATAAAGCCTTAGGAACTAACATGACATTGACTCGAGAGAGGGCACCCACCTGCACTAGGAGCCTGTCCATGGATCAGGGTGGGAGGCTTCAGGCGAAACCCaactgttttctcctctgttgacatgagaacagagaaagaaggagaaagagagagggaacatggGATAACTGGAAGCTAAGCCAGAAATTTGTTTCTAAAAAATTTGATTCTTCAAGGGTAGTTTTCCTTATCATGCAAATATCAACTAGGTTGAAAAGGAGATCTTAAGATAACTCACCAGGTTCTGAATCTGAATTATTATTTCCTGTCGGGGACTGACAGAAACTGGATGGCATGAACACATTGTTCTTAGAAACTGAATGTGCGGGTGGGAACTGTGTTAGTGACGATGTCCTTTCCCTCTTGGCCGGGGGACAGTAACTACTCTCATCTTTATCAGAGTCTTCTCCATCCTCCGCACTAGACCCTTCTACTGATCTCTTCTGAGCTGTATCTTTCTGGAACACAAACACTGGTGGGGCTATGGCATGC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU21968 lncRNA downstream 67490 19583252 ~ 19583669 (-) True G18865
TU21955 lncRNA downstream 86754 19563382 ~ 19564405 (-) True G18853
TU21954 lncRNA downstream 89424 19561526 ~ 19561735 (-) True G18852
TU21899 lncRNA downstream 112441 19536427 ~ 19538718 (-) False LOC110502382
TU21900 lncRNA downstream 112441 19536427 ~ 19538718 (-) True LOC110502382
TU22018 lncRNA upstream 4938 19661353 ~ 19663906 (-) False G18904
TU22022 lncRNA upstream 4938 19661353 ~ 19662002 (-) False G18904
TU22019 lncRNA upstream 5693 19662108 ~ 19663906 (-) True G18904
TU22017 lncRNA upstream 7897 19664312 ~ 19665665 (-) True G18903
TU22023 lncRNA upstream 10830 19667245 ~ 19667444 (-) True G18905
XM_021581316.2 mRNA downstream 18101 19630376 ~ 19633058 (-) False LOC110502937
XM_021581428.2 mRNA downstream 18126 19630376 ~ 19633033 (-) False LOC110502937
XM_021581383.2 mRNA downstream 18127 19630376 ~ 19633032 (-) False LOC110502937
XM_021581178.2 mRNA downstream 30965 19605164 ~ 19620194 (-) True LOC110502819
XM_021580480.2 mRNA downstream 112377 19536427 ~ 19538782 (-) False LOC110502382
XM_021581734.2 mRNA upstream 76454 19732869 ~ 19743641 (-) True LOC110503352
XR_002470477.2 mRNA upstream 172910 19829325 ~ 19832397 (-) True LOC110503449
XM_021581890.2 mRNA upstream 179858 19836273 ~ 19838863 (-) True LOC110503510
XM_021582117.2 mRNA upstream 185106 19841521 ~ 19844225 (-) True larp6b
XM_036964853.1 mRNA upstream 209467 19865882 ~ 19890278 (-) False tmprss9
TU21902 other downstream 18542 19630493 ~ 19632617 (-) True LOC110502937
TU21090 other downstream 765507 18876877 ~ 18885652 (-) True mydgf
TU20791 other downstream 1256299 18391632 ~ 18394860 (-) True LOC110497762
TU20793 other downstream 1259626 18390123 ~ 18391533 (-) False LOC110497762
TU19908 other downstream 1556221 18089880 ~ 18094938 (-) False LOC110497564
TU23634 other upstream 1142705 20799120 ~ 20800008 (-) True G20266
TU23821 other upstream 1428883 21085298 ~ 21089250 (-) False LOC118945319
TU23826 other upstream 1428883 21085298 ~ 21089250 (-) False LOC118945319
TU23814 other upstream 1429053 21085468 ~ 21089250 (-) False LOC118945319
TU23817 other upstream 1429053 21085468 ~ 21089250 (-) False LOC118945319

Expression Profile