RNA id: TU22018


Basic Information

Item Value
RNA id TU22018
length 2554
lncRNA type inter_gene
GC content 0.45
exon number 1
gene id G18904
representative False

Chromosome Information

Item Value
chromosome id NC_048565.1
NCBI id CM023219.2
chromosome length 95772356
location 19661353 ~ 19663906 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

tttttctccccaatttcctaCTCTATGAACACACCTGCGTTGTATTGGATCAATCACCACTACTGTAAACTATCACCTAATATATTGAAATTAATGGCATGTTAAGAGGCCAATGCAGATGACATGTACCTATGAAAACATATTCCAGTCACAGATACAGTATGAGACAGATGCTCTTGTACAATAGCAGCAAGGGCGCATCCATGTCAACTAGGTATCATAACATCCTCTTCACTCAACTTCCATTCAAAGATGGACTGTTTTGATCTCGATCTAACAGAATATCAACATTGACTTGTATAGTGATAGGAAATGCAACAAAATAGCACCAGGTTATGGAACAACAACAGCTAGGcataacaaaaaaacaacaaaaaaacaggtaGATGTTTTAAGGGAACTATAGCAGACATGACAGAAATTTCAGCAACAAAAATATAACATGAACAAAAGTGTATATCGGTCTTACAGTCACTCCCCAACAAATAACCATCAACGACCCCAATGTAAACAACATTCAAAACTTCATTATCAACCACCTTTGCCAATTATTCAATGGACAGCCCCAGTTCATGTGCATTTACGAACATTAAAACAATTCATATTGATGGGAGAAATATCACAGAGAAGGAAAAGTGCTGAAGAACGTCGGCCCCTGGCCCTTTATATAGAGACAAGTTGCCATACATTCATGTCCAGGGCCCAGTTTCTTTTTAAGTTATCTAGATTTTACCTATCGGATAGtattaaatgcatagaaatagaatgaatagaatggacaaaacattgacttgaatggggacttccgttctattcattctattcttaTCTGataggcgaaacccagataactTTTTAAAAACTGGGCCATTAGGAATAGTCCTGTTTGTAGCTACACAAGCAGAATGTGAAAAATGGAGAGAACACCATTTTACAGAGCACATTACATGGTGAGGTTTCTATAGACTGCAGTGAAGAAGAGTACTAAATAAGAAGTTGTCCTTTTTTTTTACACTTAAAAGGAGTAATCTactcaaaaactatattttggaaTTTGTTTCATTATCAACAGTGAAATGACAATTACCTAAATAAAGTTTGAGTGGATTATTCCTTTAAAGGCTGCTTATTCAATAATATACATTACAGGATATATACATTTTAACCAATAATATGTCTACttgcctgtttttttttgtttcaaaCTTTTCTTAGTATACTTTTTGTtagttaaaatacatttttttcacatCAAAGGCTTGTAGTAAATGAAAAAGTAGAACGCTATAATACAACTTAGAAATATTACTCATTCCAACGATGAGGAAGAAAAAGGCTTAAAACAAGAGGAACTACACTTCACTGAAGAAAATATGACATTATTCATCTACGTCTCTTTAAGGGCTGTTTGTTTTAAATACACCAGACCAGAGCCATCCATTTAACAAAGGAATAAATAGAGGGCTCAGCACCAGACTATTGGTGAAAAATACTGTACCCTGTGTGCGTAGTACCACCTGTTCCAATGTCTATAGCTCTTTGAATAAAATGGCAGCATTCGCTGTTCTGAGAGTATATGTGCATTTTGTAGGGTTTTGATGTCAAACAAGTTTAGGACAGATGCAAATAATGACATGCTAGATACACCAAATGCCAACACCCTAACCTAAAAGTGATTATATGGGCCTTTCTGATCGCATGAAAAAAATagggattttgttgttgttgcaatggTCTTATATGATTCTGAGATCGTGGATGTTATACACAAAGCCTTGTGATTGGAACTTATTTAAAACTAATTACATAATTGTAAACCACTCAAACATAGAAAGGGTTtcttccatatatatatatatatatatatatttgagaacATATATATTTATCTGACCTATCTaaaaaatgtttatatatttgAAACAAACAAATCTAACGGCTATATTCAGGGTAAACTTTGGGGTCATGGTGCAAACCTGTTGTAAAATGATCAAATCCAACAAGCTTTCTTATTTACAGAATTAGTTCATTTTCGCATGAATTTCAAAAGCAAAGTCGATAATATTAACTATCAATAAAAACGTAATGtaccagtaataataataatcatgaaCACAGGTAAATcccactatttaattaaatattttaTGGCTACGAACATCAAAGCAGGTGTTTGCACAAGGGATTTTAAATTCAACCAATTtgtggtaaaaaaataaatgacaatGTGGACGACAGACTAAAAACTAACAGTGGCCAGAGGTGGTATTGACGGACTAATCCTAGCTAGAGTGTGTGCAAGCATTTTGCCTTAGAAAAATACAACTTGAAGTAAGAGTTCAGACACTCTTCAATGACAAAACTCcgtgaaataaaaaaaagactTTATAAACAAATATTTGCTAGGCAACTCAATCTTTACCTCGCTGAACAAAATACAAGCCCCACTGAAGTGCCTGAGGTCTGTTCTTTTGCAAGGTGGCTAAAGTCCCACTTTTAACAGCAAACTATTTAGAATGTACTTATATCAGCTAGAGAAGAAAACTGCTTTCTC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU22007 lncRNA downstream 4938 19651159 ~ 19656415 (-) True G18895
TU21968 lncRNA downstream 77684 19583252 ~ 19583669 (-) True G18865
TU21955 lncRNA downstream 96948 19563382 ~ 19564405 (-) True G18853
TU21954 lncRNA downstream 99618 19561526 ~ 19561735 (-) True G18852
TU21899 lncRNA downstream 122635 19536427 ~ 19538718 (-) False LOC110502382
TU22017 lncRNA upstream 406 19664312 ~ 19665665 (-) True G18903
TU22023 lncRNA upstream 3339 19667245 ~ 19667444 (-) True G18905
TU22024 lncRNA upstream 5392 19669298 ~ 19669522 (-) True G18906
TU22035 lncRNA upstream 20989 19684895 ~ 19685153 (-) True G18917
TU22036 lncRNA upstream 21618 19685524 ~ 19686405 (-) True G18918
XM_021581316.2 mRNA downstream 28295 19630376 ~ 19633058 (-) False LOC110502937
XM_021581428.2 mRNA downstream 28320 19630376 ~ 19633033 (-) False LOC110502937
XM_021581383.2 mRNA downstream 28321 19630376 ~ 19633032 (-) False LOC110502937
XM_021581178.2 mRNA downstream 41159 19605164 ~ 19620194 (-) True LOC110502819
XM_021580403.2 mRNA downstream 122583 19536929 ~ 19538770 (-) False LOC110502382
XM_021581734.2 mRNA upstream 68963 19732869 ~ 19743641 (-) True LOC110503352
XR_002470477.2 mRNA upstream 165419 19829325 ~ 19832397 (-) True LOC110503449
XM_021581890.2 mRNA upstream 172367 19836273 ~ 19838863 (-) True LOC110503510
XM_021582117.2 mRNA upstream 177615 19841521 ~ 19844225 (-) True larp6b
XM_036964853.1 mRNA upstream 201976 19865882 ~ 19890278 (-) False tmprss9
TU21902 other downstream 28736 19630493 ~ 19632617 (-) True LOC110502937
TU21090 other downstream 775701 18876877 ~ 18885652 (-) True mydgf
TU20791 other downstream 1266493 18391632 ~ 18394860 (-) True LOC110497762
TU20793 other downstream 1269820 18390123 ~ 18391533 (-) False LOC110497762
TU19904 other downstream 1566415 18093155 ~ 18094938 (-) True LOC110497564
TU23634 other upstream 1135214 20799120 ~ 20800008 (-) True G20266
TU23821 other upstream 1421392 21085298 ~ 21089250 (-) False LOC118945319
TU23826 other upstream 1421392 21085298 ~ 21089250 (-) False LOC118945319
TU23814 other upstream 1421562 21085468 ~ 21089250 (-) False LOC118945319
TU23817 other upstream 1421562 21085468 ~ 21089250 (-) False LOC118945319

Expression Profile