RNA id: TCONS_00026485


Basic Information

Item Value
RNA id TCONS_00026485
length 690
RNA type processed_transcript
GC content 0.41
exon number 7
gene id XLOC_013411
representative True

Chromosome Information

Item Value
chromosome id NC_007129.7
NCBI id CM002902.2
chromosome length 51023478
location 21712296 ~ 21720051 (-)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

aactgctctgctccagtaggagacccACAACCCTCTGATGAGgttTGCTGAAGTATGACCGTATGACAGAAGGAGAGAacagctctgctccagtacgagacccacaactctgatgaggtcttatattgaaggatgaccatatgacagaggaagagaactgctctgctccagtacgagactcacaactctctgatgagcttttattgaaggatgaccatatgacagaggaagagaactgctctgctccagtaggagacccacaactctgatgaggtagaaagTTACAGTGGATCGTGATTTTGGAGGAGGTGAAGTCCAGTCTAaaagAGTCCCCTCAAGTATCATCACCATGGTACAGTGTCTGTGAAGATAGTGAAGCAGACCCAGCATTCACAAAAAAGAGAGGTCCCATAAAGAGAAGATCCTggagcaaacaggaagtacatGCTGTGGTGAAAGCTGAACCATTGGCTCTAAAAACCAGAGATTGGTCAGCTttggatttttatattaaaaactgaatctcggctatttagataaaaaatctgaataacaCTTTTATAGTAAGTATACACTATACATCATTAGTTTAGcactaactctacattaatagactttaggaagcagtttataaatacagcttcaaacgctgtattcttgacttgacttaattgtattttcatgctttgt

Function

GO: NA

KEGG: NA

Ensembl:

ensembl_id ENSDART00000143729

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00026963 lncRNA downstream 544178 21164826 ~ 21168118 (-) False XLOC_013403
TCONS_00026962 lncRNA downstream 544178 21164826 ~ 21168118 (-) True XLOC_013403
TCONS_00026461 lncRNA downstream 1104059 20598064 ~ 20608237 (-) False XLOC_013393
TCONS_00027295 lncRNA downstream 1392423 20285665 ~ 20319873 (-) False XLOC_013388
TCONS_00026961 lncRNA downstream 1392501 20305484 ~ 20319795 (-) True XLOC_013388
TCONS_00026498 lncRNA upstream 212202 21932253 ~ 21936575 (-) False XLOC_013415
TCONS_00026499 lncRNA upstream 224154 21944205 ~ 21947172 (-) True XLOC_013415
TCONS_00027296 lncRNA upstream 830544 22550595 ~ 22552314 (-) True XLOC_013420
TCONS_00027297 lncRNA upstream 1466678 23186729 ~ 23188209 (-) False XLOC_013428
TCONS_00027298 lncRNA upstream 1466678 23186729 ~ 23188268 (-) False XLOC_013428
TCONS_00026482 mRNA downstream 27241 21645309 ~ 21685055 (-) True XLOC_013409
TCONS_00026481 mRNA downstream 71907 21622414 ~ 21640389 (-) True XLOC_013408
TCONS_00026479 mRNA downstream 440923 21257261 ~ 21271373 (-) False XLOC_013407
TCONS_00026480 mRNA downstream 445193 21263212 ~ 21267103 (-) True XLOC_013407
TCONS_00026478 mRNA downstream 493445 21198762 ~ 21218851 (-) True XLOC_013406
TCONS_00026486 mRNA upstream 8143 21728194 ~ 21748808 (-) False XLOC_013412
TCONS_00026487 mRNA upstream 11682 21731733 ~ 21746421 (-) False XLOC_013412
TCONS_00026488 mRNA upstream 11682 21731733 ~ 21748966 (-) True XLOC_013412
TCONS_00026489 mRNA upstream 62023 21782074 ~ 21859019 (-) False XLOC_013413
TCONS_00026490 mRNA upstream 64068 21784119 ~ 21806613 (-) False XLOC_013413
TCONS_00026472 other downstream 687725 21020911 ~ 21024571 (-) True XLOC_013400
TCONS_00026468 other downstream 865983 20846190 ~ 20846313 (-) True XLOC_013398
TCONS_00026464 other downstream 1078373 20633789 ~ 20633923 (-) True XLOC_013395
TCONS_00026460 other downstream 1118054 20585090 ~ 20594242 (-) False XLOC_013393
TCONS_00026456 other downstream 1152306 20541850 ~ 20559990 (-) False XLOC_013392
TCONS_00026501 other upstream 363721 22083772 ~ 22083886 (-) True XLOC_013417
TCONS_00026504 other upstream 830544 22550595 ~ 22552256 (-) False XLOC_013420
TCONS_00026513 other upstream 1019681 22739732 ~ 22743366 (-) False XLOC_013426
TCONS_00026516 other upstream 1139428 22859479 ~ 22862467 (-) True XLOC_013427
TCONS_00026523 other upstream 2153293 23873344 ~ 24023013 (-) False XLOC_013432

Expression Profile

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