RNA id: TCONS_00026486


Basic Information

Item Value
RNA id TCONS_00026486
length 5380
RNA type mRNA
GC content 0.40
exon number 3
gene id XLOC_013412
representative False

Chromosome Information

Item Value
chromosome id NC_007129.7
NCBI id CM002902.2
chromosome length 51023478
location 21728194 ~ 21748966 (-)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

GCAGGGGTCGAAGCAAGCGGAGGTCTTTCCTTTCCCAAAAGGAAAAAAAGGAGAAgggggagaaagaaagaaaggtctACACAGGAAAAAAGGTGGTCCCACTCCGAAAACACCGTTTCCAAGCAGGCGGTCTCAATTTCATACTTTTCTTTTCGTATCGCCTCGTTTCCGAAGTGATACAAACACTTTAACAACCCTTATTTTGGACTGAATATCTTTGTTTTTGCAAATACTAAAGGGATGCTGTTTTTAACCGAATTAAAGTTTTAGAAATGCGGTGAAGTGAAGGGAAGAGCTGTAACTGGGGTGAGGAGGCTGGCGCTGGGAATCTTGCCTTTCTACTCCCACCATCGCCAATAAGAAAATACACTGTTAAGatTATTATCCATAAATTTCTCATTGATTGGAGTTCAGTTAATTTTGGAGGATTGATTGGAGAGGTTACTATAGTGTTTGACTGGACGTATCCTCTCGTGGCATTTGCCGGTGTGGCACTGCACCGTGCACCGTTTGGATGTTGCCTGGGAGATGAGGATGTGCTGCTGGCACCAGGAAGGTCGGAATTTGACGTGATGGGGTGCAGGACAAGCAAAGTCCTCCCAGAACCACCCGGTGACGTCCAACTTGACCTGGTCAAAAAGGTAGAGCCGCATCAGACGGATGTCTACAAAAACTTCATCAAATACGATGGTGGTGGGGAGAAAACAGGCTCGCCGTCCCCTCAGGGTCAAAGCCAGGCTGTTGCAAAGGTGAGCCAATCCCCTCCACCGGCTAATGACCAGCCAGAACCTGCTGACTCACACCGGAAGAAAGTAGCCAAATACAGAGCCAAATTTGACCCTCGAGTGACTGCCAAGTATGACATTAAAGCTTTGATAGGTCGGGGCAGTTTCAGTCGGGTAGTACGAGTGGAACACAGGAGCACACGGCAGCCATATGCCATTAAGATGATCGAGACGCGCTACCGTGAAGGCAGAGAAGTATGTGAATCTGAACTTTGCGTCCTACGACGTGTGCGCCACACTAATATTATCCAGCTAATGGAGGTGTTTGAGACGGCTGAGCGGGTCTACATGGTGATGGAGTTGGCCACTGGTGGAGAGCTGTTCGACCGCATCATCACCCGTGGGTCTTTCACAGAAAGGGACGCCACACGGGTGCTTCAGATGGTTCTTGATGGGGTGAAGTACCTCCATACATTGGGCATCACGCACAGGGACTTAAAGCCGGAAAACTTGCTTTACTACCATCCTGGTGCTGATTCCAAGATTATGATCACAGACTTTGGCTTGGCCAGCACACGAAAGAAAGGGGACGAATGTTTGATGAAGACTACCTGTGGAACACCTGAGTACATCGCTCCCGAGATACTCGTTCGCAAACCATACACTAATGCAGTAGATATGTGGGCACTGGGTGTCATTTCCTACATCCTGCTCAGTGGAACCATGCCTTTTGAGGATGACAATCGAATGCGTCTGTATCGACAGATCCTCAAAGGAAAATACAGCTTCTCTGGGGAGCCATGGCCAAGTGTTTCCAATCTGGCAAAGGACTTCATCGATCGCGTCCTCACGGTGGATCCTAATGAGCGGCTCTCTGCGGGCCAGGCACTCAAACACCCCTGGATTGTAAGTATGGCAGCTTCCTCCTCCATGAAGAATCTGCACCGGTCCATTTCCCAGAATCTCCTGAAGAGAGCTTCGTCACGCTGCCACAGCACAAAATCATCCCAGTCCACTCGCTCCAGCCGCTCCACCAAGTCCAGCAAGGCACGACGCCTTCGTGAAAAAGAGCTGCGAGAGCTGAACCGCCGGTACCAGCAGCAGTGCAATGGTTAAGAGGAAATAAGACAGCTTTTACTTTAGGAAAAACAGTGGAGAGAGCGGAACAACTTCCTGCTCCGTCACCACAGAGCCAATTAGCAGAAAGCCTCCTTCTAAAACTTCCCTCGTTTTCTATTTTTCTGCTGTCTCTTTCTTGTTTATTACCTTTTATgtgagtgttttatttatttattgctggtGTATTTTCATGTTCGTATTGTCCTTGAAAATTATCTCATTCAGCATTTTACATGATTGTATCTGTTGAACAGAATTTTACAAACGTCGCTGGAAGGACTAAGAATATACCTTCCTGATTTTGCTGTGAATTATTTTGTTATGGTACCCAGTCAGAAGATCGCTCTTCTGATGGGGGAAATGTGCTGTTTATTCATTATTACCAACAAATCACTAGACATATTGGTAGTTTTTTTCTTACCTTAACGTTACTTTGAACATGAGGGACGGTTAGGATACAACCATTGGTAACTGCAGGTCACATTTAGAATCAGTCtgctgtttaaatataataatgagccTTGATGGGATAGATTGGCAAAAAATGGAGATGTCTctatcatttactcagccttacTTTGTTCCAGTTTTGCAAAAGTGGCCTTAATGAACCATTTTGACACAAAAATCTTCATTTTGTAATCTTGTTTTGCCTCGGAAATATgttaagaacattttttttttttttaaattttgggaCACTTTGATAACTACAGAGACAATAGCCATGCTTTTGGTCTTCTCGCATTCTCTCTTATATAAGCTTGTCTTGGACTATTAGTATTTCTCTTTTTGGTTAAATTTATTAGGTAAATTATTGTAAAGTCTGTGAAACATTCTTTTGTCAAAGAGTAgttaaaaacaactaaatttgAAGTTACTTGAGGGTCCATATGTGAGTGTTAAGGCTGCCatacattatttgttattttatttctacaaaattaactaaaataatcaaaaaggATGTTTGAAAGACCACTGTGTACATTTGCAGCCCTTTTTTCCTTTCTAAAAGGAAAGTTAAATGCGTTAAATGCTCATTAAACtaagttaaacaggtttggaactgtATGAAGCTGAGTAAATGATTACATGAAAAATGGCAGTTAATTTTCTCAACCCTAGGCTATTCAAGATGTACTATGACTTTTCTTTGGTAGAAATACAATACCTGTGGTTCCTGATGATGCATAGAGATTTTGTGGAGCAAAACTACtcacaacattacattacattgcattataCCATGTGGGTGCAAACTCCAATGTGAGCCAATGTTGTGTGTTTACAATGGAAAAGGAGGACATGTATTGTGTTGTTCATCAAATTGGTCCACGATTTTGCTTAACCTGGATGCTGCAACCACCATAAAATAGTAAGATTGGTGTATCATTAGTGAGACACCAATCACtataatagtatataatagtGTTTAACAGTTTACCAAGGACCACAATTTAAGCTAAAGATAATATTTAATGttctaataaagaaaaaaaaaaacttggatgGGCTGAGAACGAgtactttaactgtacattttcAGTTTTCGATGAACTATATCTTTAATTTGGTCCAAAAATATCAAGGAGCTCTACATTCTGCACAATATGTGTGTTATTTATCCTAAATAAGACACATTATAAGAACCAAAAATGGTAGTATTAGTTGTTAATACCtgtcaaaaacatttcaaatcatCTTGAGACTTgactttaaatcaggggtgtcaaactcaattcctggagggccgcaacaCTGTAGAGTTtggttccagccctgcttcaacacagctatctgtaggtatcaaacaagcctaaagcacttaattagtttgatcaagtgtgtttaattagggttggaactaaactgtgctgagctgcagctttccaggaactgaatttgacacctgtgctttaaagAATTCGTTTACCAACCTGCACACTCAAACTTCTatcatgatttactcaccccAAAGTTGttccaaactgaaaaaaataaataaattcgtcTTCGTAACACAAATTAATATGTTTAAACCAATATTGTGTCCCACCAttgaaactctgaccaatatgAAGCAGTTTAATCCAAGTCTTCGGAAAAATCATGATCACTATATATAATGAGCACATTGTAGTCCTTTATTAACATATAAAGAACCTGTTTGACATACAATAACAAACCTCATTGGATCTTGTGTAAGCTCGAAGATGTCATGTGACAATCAAAAACGAACCTTGTTGGTTCTCTCATGTCAAGCAAGCATTCCAGAGCTTCCATAACCAAATTTGAAAGTAGTAAACACTGCTTGCTGATCAGTGTTTATATtcgaataaatttaattaaacctGTTCAATTTAGAAAGGGATTGCGTCTCTTATTTTTAATCTCTATGAATGTTTTAAAGCATCAGAGTTTGAGTGAACTGACTTTCAGCGGAGTCACAAttagatttaattaaaaatggcattaacactttacaataaggtttcagtAGTTAATGAATTTACAAACAAATgatgaacaaaaaaatattattttaattcccAGGTTCTGCTGGTTGAGTTTTACAAATTTtcattgccaatcttaagccaattgtgATCATTTGTATTGGGtcaatttggaatttccccaaccaTTGCAGAGCGCGGAGGACCAAAGTGAGTGCTCCGACTTGGCCCCACCCTGGTCCcgatgaacaatacatttattacagtgtgtatTCATCTTTGTCAATGttacttaatgaaaataaattcacTCTTTGTTAGTTCTCATTACCTCACAGTTCATTATGTTAACAAACACaatttgaattttaataatgcgtcagtaaatttaaaactataattaataaattccgTACAATTATTGTTCATTCTTGGTTTatgtcagtaaatacattacCTTAAATTAATgaaaccttaatgtaaagtgtgactaaaatatctatatttgtgCTTCGAACGTGAAGGTAAAACAACATGAAGGTCAACCGAttcaattttggggtgaactaaccttcgaaaaagacacaaaaatacAGTGTAGCCAAATGGGCTATTGATTTAGTCTTTAAATGTGGTCGGTGAAGAAACCTGCAGTGATTCTTGACTTCTGCAGTTGGATCTGCCTGTACATGTATTGCAGTAATTAATAACTGATGCTGATTGCTTTCTCAGTATGGGCGGCCAGTATTGGAAAGCCCTGAATCACAATCGGTTGCTTTCTCTGCCACCAGCTGTTGTTTCTTGAGCAAGACACTGAACACCATGAAGGCCTTTTGGCAGATTCTCACTCTTTccccccctgtcagaaaccagcAGCGATGTACCAAAGAAATTCCTGTGTGCCTGATGTATTAACAAGGAACATTTGGTGAGATCTGACATATGATTCCTCACGAAAATAATTACTGATAAAACTGTGATGATATGAAGATTTCTCAAAATGTGTTCTTAGAtctgttttttatgtttgttttttttatataaaagtgtATATCAAAAATTAAAGAGGAAAGGGAA

Function

GO:

id name namespace
GO:0006468 protein phosphorylation biological_process
GO:0016310 phosphorylation biological_process
GO:0016740 transferase activity molecular_function
GO:0005524 ATP binding molecular_function
GO:0000166 nucleotide binding molecular_function
GO:0004672 protein kinase activity molecular_function
GO:0004674 protein serine/threonine kinase activity molecular_function
GO:0016301 kinase activity molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-050119-1 Predicted to enable ATP binding activity; protein serine kinase activity; and protein threonine kinase activity. Predicted to act upstream of or within protein phosphorylation. Orthologous to human PSKH1 (protein serine kinase H1).

Ensembl:

ensembl_id ENSDART00000079253

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00026963 lncRNA downstream 560076 21164826 ~ 21168118 (-) False XLOC_013403
TCONS_00026962 lncRNA downstream 560076 21164826 ~ 21168118 (-) True XLOC_013403
TCONS_00026461 lncRNA downstream 1119957 20598064 ~ 20608237 (-) False XLOC_013393
TCONS_00027295 lncRNA downstream 1408321 20285665 ~ 20319873 (-) False XLOC_013388
TCONS_00026498 lncRNA upstream 183445 21932253 ~ 21936575 (-) False XLOC_013415
TCONS_00026499 lncRNA upstream 195397 21944205 ~ 21947172 (-) True XLOC_013415
TCONS_00027296 lncRNA upstream 801787 22550595 ~ 22552314 (-) True XLOC_013420
TCONS_00027297 lncRNA upstream 1437921 23186729 ~ 23188209 (-) False XLOC_013428
TCONS_00027298 lncRNA upstream 1437921 23186729 ~ 23188268 (-) False XLOC_013428
TCONS_00026483 mRNA downstream 2389 21686115 ~ 21725805 (-) False XLOC_013410
TCONS_00026484 mRNA downstream 2556 21688266 ~ 21725638 (-) True XLOC_013410
TCONS_00026482 mRNA downstream 43139 21645309 ~ 21685055 (-) True XLOC_013409
TCONS_00026481 mRNA downstream 87805 21622414 ~ 21640389 (-) True XLOC_013408
TCONS_00026479 mRNA downstream 456821 21257261 ~ 21271373 (-) False XLOC_013407
TCONS_00026489 mRNA upstream 33266 21782074 ~ 21859019 (-) False XLOC_013413
TCONS_00026490 mRNA upstream 35311 21784119 ~ 21806613 (-) False XLOC_013413
TCONS_00026492 mRNA upstream 109936 21858744 ~ 21910991 (-) False XLOC_013413
TCONS_00026491 mRNA upstream 109936 21858744 ~ 21910991 (-) False XLOC_013413
TCONS_00026493 mRNA upstream 111709 21860517 ~ 21910991 (-) False XLOC_013413
TCONS_00026485 other downstream 8143 21712296 ~ 21720051 (-) True XLOC_013411
TCONS_00026472 other downstream 703623 21020911 ~ 21024571 (-) True XLOC_013400
TCONS_00026468 other downstream 881881 20846190 ~ 20846313 (-) True XLOC_013398
TCONS_00026464 other downstream 1094271 20633789 ~ 20633923 (-) True XLOC_013395
TCONS_00026460 other downstream 1133952 20585090 ~ 20594242 (-) False XLOC_013393
TCONS_00026501 other upstream 334964 22083772 ~ 22083886 (-) True XLOC_013417
TCONS_00026504 other upstream 801787 22550595 ~ 22552256 (-) False XLOC_013420
TCONS_00026513 other upstream 990924 22739732 ~ 22743366 (-) False XLOC_013426
TCONS_00026516 other upstream 1110671 22859479 ~ 22862467 (-) True XLOC_013427
TCONS_00026523 other upstream 2124536 23873344 ~ 24023013 (-) False XLOC_013432

Expression Profile

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