RNA id: TU22107


Basic Information

Item Value
RNA id TU22107
length 460
lncRNA type inter_gene
GC content 0.42
exon number 2
gene id G18981
representative True

Chromosome Information

Item Value
chromosome id NC_048565.1
NCBI id CM023219.2
chromosome length 95772356
location 19776997 ~ 19809300 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

tgtggaaagaactgaaaactgctgttcacaaatgctctccatccaacctcactgagctcgagctgttttgcaaggaggaatgggaaaaaatgtcagtctctcgatgtgcaaaactgatagagacataccccaagcgacttacagctgtaatcacagcaaaaggtggcgctacaaagtattaacttaagggggctgaataattttgcacgcccaacttttcagtttttgatttgttaaaaaagccttgaaatacatcccccaattgactcaaatcatgtaACGATCGTTGTTggaaggattggaccaaggtTCATCATATTTATtaatgtgaaccagcaacaaaacaaaTAAAGAGTAACAAAACGAAACGTTGCTTTTGTCGGGctcaaaagcaacaatacaaaatcaagatcccagaaacaacaggtgggaaaaggctgcctaaatatgatcctcaATT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU22092 lncRNA downstream 25187 19751457 ~ 19751810 (-) True G18966
TU22085 lncRNA downstream 33856 19742852 ~ 19743141 (-) True G18960
TU22040 lncRNA downstream 86804 19689929 ~ 19690193 (-) True G18922
TU22039 lncRNA downstream 87421 19689354 ~ 19689576 (-) True G18921
TU22036 lncRNA downstream 90592 19685524 ~ 19686405 (-) True G18918
TU22130 lncRNA upstream 2672 19811972 ~ 19812249 (-) True G19004
TU22132 lncRNA upstream 5483 19814783 ~ 19815136 (-) True G19006
TU22141 lncRNA upstream 19526 19828826 ~ 19829049 (-) True G19015
TU22159 lncRNA upstream 30537 19839837 ~ 19841484 (-) True G19030
TU22161 lncRNA upstream 36332 19845632 ~ 19845952 (-) True G19032
XM_021581734.2 mRNA downstream 33356 19732869 ~ 19743641 (-) True LOC110503352
XM_021581316.2 mRNA downstream 143939 19630376 ~ 19633058 (-) False LOC110502937
XM_021581428.2 mRNA downstream 143964 19630376 ~ 19633033 (-) False LOC110502937
XM_021581383.2 mRNA downstream 143965 19630376 ~ 19633032 (-) False LOC110502937
XM_021581178.2 mRNA downstream 156803 19605164 ~ 19620194 (-) True LOC110502819
XR_002470477.2 mRNA upstream 20025 19829325 ~ 19832397 (-) True LOC110503449
XM_021581890.2 mRNA upstream 26973 19836273 ~ 19838863 (-) True LOC110503510
XM_021582117.2 mRNA upstream 32221 19841521 ~ 19844225 (-) True larp6b
XM_036964853.1 mRNA upstream 56582 19865882 ~ 19890278 (-) False tmprss9
XM_036964798.1 mRNA upstream 56582 19865882 ~ 19890280 (-) False tmprss9
TU21902 other downstream 144380 19630493 ~ 19632617 (-) True LOC110502937
TU21090 other downstream 891345 18876877 ~ 18885652 (-) True mydgf
TU20791 other downstream 1382137 18391632 ~ 18394860 (-) True LOC110497762
TU20793 other downstream 1385464 18390123 ~ 18391533 (-) False LOC110497762
TU19904 other downstream 1682059 18093155 ~ 18094938 (-) True LOC110497564
TU23634 other upstream 989820 20799120 ~ 20800008 (-) True G20266
TU23821 other upstream 1275998 21085298 ~ 21089250 (-) False LOC118945319
TU23826 other upstream 1275998 21085298 ~ 21089250 (-) False LOC118945319
TU23814 other upstream 1276168 21085468 ~ 21089250 (-) False LOC118945319
TU23817 other upstream 1276168 21085468 ~ 21089250 (-) False LOC118945319

Expression Profile