RNA id: TU22159


Basic Information

Item Value
RNA id TU22159
length 1616
lncRNA type antisense_over
GC content 0.38
exon number 2
gene id G19030
representative True

Chromosome Information

Item Value
chromosome id NC_048565.1
NCBI id CM023219.2
chromosome length 95772356
location 19839837 ~ 19841484 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

CATGAACAGAGTGAGCAACACACATTTTACAGTTCAGAGGCAATATGCAACTGTCCCCATGCTAAAGGTACAGTGATCACAAACGGAACAATTTAAGCAGCCCAATCATGCAGTTGTACTGAAAGAAAAAGCAGACAAACTTTTAGCCACCTGATTTAAGCCAACACTATATTGCTTCTATAATGATTAAGCAAAACCATACAATATAAAGAGTACAAGGCATGGCTGTGACGTCAAACTACATTTGTAGATTTAATACAAGGTTCAATCAGGAAGGCTGATCTGAATGCTTGTTTAAACAACTCACTTTGTATTCTATGCCCGTAGAATACAAAAACAGCATAGCATCTTGTTTCATCTCTTCCCATTAGCCAAGTGTGGAATGCCATTCACCTATTTACCTTAGCCTATAAGCGTGGCACAATAATGCACATTCCTCACGCTTGCCATTTAACCTATGGGCTCACGCTTACCACCTTTCTCTCAACCAATGGGTCTAAATCTTGGGATGTATTTGTCAATTTACCCTTGCTCTCATACttgctgtttttcagcaacagTTTGACAACCATCCACCTTCCTACCACCACCTATAATAACCTTGAAGGACATCATAGGAACTTTCCTTCCATTATGAAAAAAATAACCACTTTGATTCTGACCCTACTGGAATGTGACATCTATGTAGCAGCTAATGTTGCATAGACTTGCTTCACTGAAGCAAATATTGATGCCAGTAAGAGGCATGTCTTATATTCACCATTAAATGTGTCATGTTTACAAGGGAGTAACTACAATCCCTGAAAAAACTGAATTGTCACGAAAAAAAAGATTAAAagtatacactacatatacaaagcATGGGATGGATTGGAACCTAGCCTTGCAGGTGCTGCAGATGTACTTTCTGAACTTTGACCAGGTGAACACTGACCATAGAGGTCCTGTTTACACTATTTCCAAATATTTGATATTACAGTATAAAAATATAGCAGTTCAAACAGTAACAGACGATAACCAGATGTCTATACATTTCACATCTGGTTAAGACATGGAATCAAGGCAGATTAGTTTCTCTCCATTTGGTTACATCAAAGGCTTCATAACGTGTCAAGCAGTTCCCCCACATTCATGTAAGATGTTAAGTTGAACATTAAAAAAATAACGACATGCATGATGTTTTGAAATTACTCATGCCTCTACTTCAAGTACTATCCTCTTCTAGAACCTTTTCACCTCTAACCTATGTAACTCTTCTCAGGGGCCTTTTACTATACCGTTGTTCCAAACACTATCTCATCCAGCTCCTGGTCATCCATGTCATCCTCACTGAGGGAGAAGTCTTTGTGGTTAGAGATGCGGTTGGGACTGCAGTTTGACTCCCCGTCTGTGAGGGACGTATTGGCAGTGGGTTCACCCATCCCCACAACTGGCCCAAGTCTTTCTGCCTCAGCCATATGGGACAGCATACTGTCTAGTAAAGGCCTGCTCTTGCAGATGTTGTCCAGGAGCTGGCAGCGATGTTGCAACTGTCCTATCATAGCATCCTTCTCCTTGACCATGTTCTGAAACCTCTGGATGGTCTCTTCTGACTTGCACAGCTTCTCGTGGAGGTA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU22141 lncRNA downstream 10788 19828826 ~ 19829049 (-) True G19015
TU22132 lncRNA downstream 24701 19814783 ~ 19815136 (-) True G19006
TU22130 lncRNA downstream 27588 19811972 ~ 19812249 (-) True G19004
TU22107 lncRNA downstream 30537 19776997 ~ 19809300 (-) True G18981
TU22092 lncRNA downstream 88027 19751457 ~ 19751810 (-) True G18966
TU22161 lncRNA upstream 4148 19845632 ~ 19845952 (-) True G19032
TU22163 lncRNA upstream 12641 19854125 ~ 19854347 (-) True G19034
TU22167 lncRNA upstream 15485 19856969 ~ 19857241 (-) True G19038
TU22220 lncRNA upstream 23194 19864678 ~ 19865605 (-) True G19089
TU22223 lncRNA upstream 25513 19866997 ~ 19867207 (-) False tmprss9
XM_021581890.2 mRNA downstream 974 19836273 ~ 19838863 (-) True LOC110503510
XR_002470477.2 mRNA downstream 7440 19829325 ~ 19832397 (-) True LOC110503449
XM_021581734.2 mRNA downstream 96196 19732869 ~ 19743641 (-) True LOC110503352
XM_021581316.2 mRNA downstream 206779 19630376 ~ 19633058 (-) False LOC110502937
XM_021581428.2 mRNA downstream 206804 19630376 ~ 19633033 (-) False LOC110502937
XM_021582117.2 mRNA upstream 37 19841521 ~ 19844225 (-) True larp6b
XM_036964853.1 mRNA upstream 24398 19865882 ~ 19890278 (-) False tmprss9
XM_036964798.1 mRNA upstream 24398 19865882 ~ 19890280 (-) False tmprss9
XR_005040019.1 mRNA upstream 78081 19919565 ~ 19932387 (-) False LOC110504151
XR_002470564.2 mRNA upstream 78081 19919565 ~ 19934801 (-) False LOC110504151
TU21902 other downstream 207220 19630493 ~ 19632617 (-) True LOC110502937
TU21090 other downstream 954185 18876877 ~ 18885652 (-) True mydgf
TU20791 other downstream 1444977 18391632 ~ 18394860 (-) True LOC110497762
TU20793 other downstream 1448304 18390123 ~ 18391533 (-) False LOC110497762
TU19904 other downstream 1744899 18093155 ~ 18094938 (-) True LOC110497564
TU23634 other upstream 957636 20799120 ~ 20800008 (-) True G20266
TU23821 other upstream 1243814 21085298 ~ 21089250 (-) False LOC118945319
TU23826 other upstream 1243814 21085298 ~ 21089250 (-) False LOC118945319
TU23814 other upstream 1243984 21085468 ~ 21089250 (-) False LOC118945319
TU23817 other upstream 1243984 21085468 ~ 21089250 (-) False LOC118945319

Expression Profile