RNA id: TCONS_00026488


Basic Information

Item Value
RNA id TCONS_00026488
length 1827
RNA type mRNA
GC content 0.49
exon number 4
gene id XLOC_013412
representative True

Chromosome Information

Item Value
chromosome id NC_007129.7
NCBI id CM002902.2
chromosome length 51023478
location 21728194 ~ 21748966 (-)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

CATTTTTCAAGTTTTgaaaattgttttgttgttagCATATAACGGATGCATGCTGCCatacacacactgatgtttttctAAAAGACGcacagattaaaaacaaaaagtttttctTGCTTCTCAGCCATATTTATGATTCTGACTTCACAATATTTGCTGCAGGGGTCGAAGCAAGCGGAGGTCTTTCCTTTCCCAAAAGGAAAAAAAGGAGAAgggggagaaagaaagaaaggtctACACAGGAAAAAAGTTTTAGAAATGCGGTGAAGTGAAGGGAAGAGCTGTAACTGGGGTGAGGAGGCTGGCGCTGGGAATCTTGCCTTTCTACTCCCACCATCGCCAATAAGAAAATACACTGTTAAGatTATTATCCATAAATTTCTCATTGATTGGAGTTCAGTTAATTTTGGAGGATTGATTGGAGAGGTTACTATAGTGTTTGACTGGACGTATCCTCTCGTGGCATTTGCCGGTGTGGCACTGCACCGTGCACCGTTTGGATGTTGCCTGGGAGATGAGGATGTGCTGCTGGCACCAGGAAGGTCGGAATTTGACGTGATGGGGTGCAGGACAAGCAAAGTCCTCCCAGAACCACCCGGTGACGTCCAACTTGACCTGGTCAAAAAGGTAGAGCCGCATCAGACGGATGTCTACAAAAACTTCATCAAATACGATGGTGGTGGGGAGAAAACAGGCTCGCCGTCCCCTCAGGGTCAAAGCCAGGCTGTTGCAAAGGTGAGCCAATCCCCTCCACCGGCTAATGACCAGCCAGAACCTGCTGACTCACACCGGAAGAAAGTAGCCAAATACAGAGCCAAATTTGACCCTCGAGTGACTGCCAAGTATGACATTAAAGCTTTGATAGGTCGGGGCAGTTTCAGTCGGGTAGTACGAGTGGAACACAGGAGCACACGGCAGCCATATGCCATTAAGATGATCGAGACGCGCTACCGTGAAGGCAGAGAAGTATGTGAATCTGAACTTTGCGTCCTACGACGTGTGCGCCACACTAATATTATCCAGCTAATGGAGGTGTTTGAGACGGCTGAGCGGGTCTACATGGTGATGGAGTTGGCCACTGGTGGAGAGCTGTTCGACCGCATCATCACCCGTGGGTCTTTCACAGAAAGGGACGCCACACGGGTGCTTCAGATGGTTCTTGATGGGGTGAAGTACCTCCATACATTGGGCATCACGCACAGGGACTTAAAGCCGGAAAACTTGCTTTACTACCATCCTGGTGCTGATTCCAAGATTATGATCACAGACTTTGGCTTGGCCAGCACACGAAAGAAAGGGGACGAATGTTTGATGAAGACTACCTGTGGAACACCTGAGTACATCGCTCCCGAGATACTCGTTCGCAAACCATACACTAATGCAGTAGATATGTGGGCACTGGGTGTCATTTCCTACATCCTGCTCAGTGGAACCATGCCTTTTGAGGATGACAATCGAATGCGTCTGTATCGACAGATCCTCAAAGGAAAATACAGCTTCTCTGGGGAGCCATGGCCAAGTGTTTCCAATCTGGCAAAGGACTTCATCGATCGCGTCCTCACGGTGGATCCTAATGAGCGGCTCTCTGCGGGCCAGGCACTCAAACACCCCTGGATTGTAAGTATGGCAGCTTCCTCCTCCATGAAGAATCTGCACCGGTCCATTTCCCAGAATCTCCTGAAGAGAGCTTCGTCACGCTGCCACAGCACAAAATCATCCCAGTCCACTCGCTCCAGCCGCTCCACCAAGTCCAGCAAGGCACGACGCCTTCGTGAAAAAGAGCTGCGAGAGCTGAACCGCCGGTACCAGCAGCAGTGCAATGGTTAA

Function

GO:

id name namespace
GO:0006468 protein phosphorylation biological_process
GO:0016310 phosphorylation biological_process
GO:0016740 transferase activity molecular_function
GO:0005524 ATP binding molecular_function
GO:0000166 nucleotide binding molecular_function
GO:0004672 protein kinase activity molecular_function
GO:0004674 protein serine/threonine kinase activity molecular_function
GO:0016301 kinase activity molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-050119-1 Predicted to enable ATP binding activity; protein serine kinase activity; and protein threonine kinase activity. Predicted to act upstream of or within protein phosphorylation. Orthologous to human PSKH1 (protein serine kinase H1).

Ensembl:

ensembl_id ENSDART00000181910

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00026963 lncRNA downstream 563615 21164826 ~ 21168118 (-) False XLOC_013403
TCONS_00026962 lncRNA downstream 563615 21164826 ~ 21168118 (-) True XLOC_013403
TCONS_00026461 lncRNA downstream 1123496 20598064 ~ 20608237 (-) False XLOC_013393
TCONS_00027295 lncRNA downstream 1411860 20285665 ~ 20319873 (-) False XLOC_013388
TCONS_00026498 lncRNA upstream 183287 21932253 ~ 21936575 (-) False XLOC_013415
TCONS_00026499 lncRNA upstream 195239 21944205 ~ 21947172 (-) True XLOC_013415
TCONS_00027296 lncRNA upstream 801629 22550595 ~ 22552314 (-) True XLOC_013420
TCONS_00027297 lncRNA upstream 1437763 23186729 ~ 23188209 (-) False XLOC_013428
TCONS_00027298 lncRNA upstream 1437763 23186729 ~ 23188268 (-) False XLOC_013428
TCONS_00026483 mRNA downstream 5928 21686115 ~ 21725805 (-) False XLOC_013410
TCONS_00026484 mRNA downstream 6095 21688266 ~ 21725638 (-) True XLOC_013410
TCONS_00026482 mRNA downstream 46678 21645309 ~ 21685055 (-) True XLOC_013409
TCONS_00026481 mRNA downstream 91344 21622414 ~ 21640389 (-) True XLOC_013408
TCONS_00026479 mRNA downstream 460360 21257261 ~ 21271373 (-) False XLOC_013407
TCONS_00026489 mRNA upstream 33108 21782074 ~ 21859019 (-) False XLOC_013413
TCONS_00026490 mRNA upstream 35153 21784119 ~ 21806613 (-) False XLOC_013413
TCONS_00026492 mRNA upstream 109778 21858744 ~ 21910991 (-) False XLOC_013413
TCONS_00026491 mRNA upstream 109778 21858744 ~ 21910991 (-) False XLOC_013413
TCONS_00026493 mRNA upstream 111551 21860517 ~ 21910991 (-) False XLOC_013413
TCONS_00026485 other downstream 11682 21712296 ~ 21720051 (-) True XLOC_013411
TCONS_00026472 other downstream 707162 21020911 ~ 21024571 (-) True XLOC_013400
TCONS_00026468 other downstream 885420 20846190 ~ 20846313 (-) True XLOC_013398
TCONS_00026464 other downstream 1097810 20633789 ~ 20633923 (-) True XLOC_013395
TCONS_00026460 other downstream 1137491 20585090 ~ 20594242 (-) False XLOC_013393
TCONS_00026501 other upstream 334806 22083772 ~ 22083886 (-) True XLOC_013417
TCONS_00026504 other upstream 801629 22550595 ~ 22552256 (-) False XLOC_013420
TCONS_00026513 other upstream 990766 22739732 ~ 22743366 (-) False XLOC_013426
TCONS_00026516 other upstream 1110513 22859479 ~ 22862467 (-) True XLOC_013427
TCONS_00026523 other upstream 2124378 23873344 ~ 24023013 (-) False XLOC_013432

Expression Profile

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