RNA id: TU23270


Basic Information

Item Value
RNA id TU23270
length 521
lncRNA type inter_gene
GC content 0.48
exon number 2
gene id G19960
representative True

Chromosome Information

Item Value
chromosome id NC_048565.1
NCBI id CM023219.2
chromosome length 95772356
location 20145355 ~ 20169899 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

agggaacacccccctatccacatagatggaacagtagtggagagggtagtaagttttaagttcctcggcatacacatcacagacaaactgaattggtccacccacacagacagcatcgtgaagaaggcgcagcagcgcctcttcaacctcaggaggctgaagaaatttggcttgtcaccaaaagtactcacaaacttctacagatgcacaatcgagagcatcctgtcaggctgtatcactgcctggtacggcaactgctccacccacaaccgtaaggctctccagagggtagtgaggtctgcacaacgcatcaccgggggcaaactacctgccctccaggacacctacaccacccgatgtcacaggaaggccatagagatcatcaaggacaacaaccacccgagccactgcctgttcaccccactatcatccagaaggcgagatcagtacaggtgcatcaaagctgggaccgagagactgaaaaacagcttctatctcaaggccatcagactgttaaacag

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU23268 lncRNA downstream 2745 20142347 ~ 20142610 (-) True G19959
TU23262 lncRNA downstream 10692 20133585 ~ 20134663 (-) True G19953
TU23246 lncRNA downstream 42648 20102492 ~ 20102707 (-) True G19938
TU22462 lncRNA downstream 50777 20094371 ~ 20094578 (-) True G19293
TU22426 lncRNA downstream 55755 20041899 ~ 20089600 (-) True G19266
TU23278 lncRNA upstream 1853 20171752 ~ 20172041 (-) True G19967
TU23279 lncRNA upstream 2635 20172534 ~ 20172841 (-) True G19968
TU23299 lncRNA upstream 31477 20201376 ~ 20204091 (-) True G19984
TU23310 lncRNA upstream 61499 20231398 ~ 20231759 (-) True G19994
TU23315 lncRNA upstream 70621 20240520 ~ 20240774 (-) True G19999
XM_021583115.2 mRNA downstream 28054 20096398 ~ 20117301 (-) True LOC110504304
XR_002470564.2 mRNA downstream 210554 19919565 ~ 19934801 (-) False LOC110504151
XR_005040019.1 mRNA downstream 212968 19919565 ~ 19932387 (-) False LOC110504151
XM_036964798.1 mRNA downstream 255075 19865882 ~ 19890280 (-) False tmprss9
XM_036964853.1 mRNA downstream 255077 19865882 ~ 19890278 (-) False tmprss9
XM_021584354.1 mRNA upstream 10217 20180116 ~ 20186752 (-) False LOC110505227
XM_021584517.2 mRNA upstream 10442 20180341 ~ 20185873 (-) False LOC110505227
XM_021584436.2 mRNA upstream 10442 20180341 ~ 20187417 (-) True LOC110505227
XM_036965841.1 mRNA upstream 35677 20205576 ~ 20209324 (-) False LOC110505456
XM_021584722.2 mRNA upstream 35677 20205576 ~ 20211949 (-) False LOC110505456
TU21902 other downstream 512738 19630493 ~ 19632617 (-) True LOC110502937
TU21090 other downstream 1259703 18876877 ~ 18885652 (-) True mydgf
TU20791 other downstream 1750495 18391632 ~ 18394860 (-) True LOC110497762
TU20793 other downstream 1753822 18390123 ~ 18391533 (-) False LOC110497762
TU19904 other downstream 2050417 18093155 ~ 18094938 (-) True LOC110497564
TU23634 other upstream 629221 20799120 ~ 20800008 (-) True G20266
TU23821 other upstream 915399 21085298 ~ 21089250 (-) False LOC118945319
TU23826 other upstream 915399 21085298 ~ 21089250 (-) False LOC118945319
TU23814 other upstream 915569 21085468 ~ 21089250 (-) False LOC118945319
TU23817 other upstream 915569 21085468 ~ 21089250 (-) False LOC118945319

Expression Profile