RNA id: TU23299


Basic Information

Item Value
RNA id TU23299
length 2687
lncRNA type inter_gene
GC content 0.44
exon number 2
gene id G19984
representative True

Chromosome Information

Item Value
chromosome id NC_048565.1
NCBI id CM023219.2
chromosome length 95772356
location 20201376 ~ 20204091 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

tgcacatgggaacaaagatcatactctttggagaaatgtcctatggtctgatgaagcaaaaatagaactgtttggtcataatgaccatcgttatgtttggaggaaaacggggaaggcttgcaagccgaagaacaccatcccaaccgtgaagcacaggggtggcagcatcatgttgtgggggttctctgctgcaggagggacaggtgcacttcacaaaatagatggcatcaggaggatggaaaattatgtggatatattgaagcaacatcgcaAGACATTAATCAGGAAGTCATagcttggtcttccaaatggacaatgaccgcaagcatacttccaaagtcatggtattggagaggccatcacaaagccctgacctcaatcctgtagaaaatttgtgggcagaattgaaaaagtgtgtgctagcaaggaggcctacaaacctgactcaattacactagctctgtcaggaggaatgggccaaaattcacccaacttattgtgggaagcttgtggagggctacctgaaacgtttgacccaaggtaaacaatttaatggcaatgctaccaaatactaattgagtggatgtgaccttctgacccactgggaatgtgatgaaataaataaaagctgaataaatcattctctgtattattttgacatttcactttcttagaATAAAGGGgtgaacctaactgacctaagacagggattttttactagaattaaatgtcaggaattgtgaaaaactgagtttgaatgtatttggctaaggtgtatgtaaacttccgacttcaactgtgtatgggTGTTTGGTTTGAGTTCCTCTTTGTTCAGTTTATATATTTTACTTTCTTCCTTGTACACTGTATGGTCACTTCAGAACCCCCTTTGTCTTAGCCCAGCTTAATTTCTGCacatttgtgtatatatatatatatattgttaatcaTAGTGTTGTCCATGGTTGAACGTAAAAGTATTGACCCTGAATGTTAACTGGCCTGAATAGGAGAGAGACTGAATGCAAATAGCCTCAGTAGAAAGCTCAAATTATGGTCCACAGAAGCCAAAAACCTAGGCCTAGATTTGACGCTAATTTATTTCTATGATAGTAGTATTTGTTATAATCCCTTCATGGCAATCATACTCCTGTGTATTGCTTATTTTGTAGGTGCAGGTTCAACTCTTCCAGTACCTGTAGGCTTCATGCATAGGTTTGACTGAGGGTTTATCACCTGAAGGGCTTTGCAGTGGGACAGCTAAGCTGTATAAGTGTTATGCAGCTGTGAGAATCCTGGTTATGGGAGTGGCTTTCTGAAATCAGTTTCAACCTGAAAAATTGTGATCTCCAGTCACAGTAAACGAAATAGGAAAGTCATCCTCTAAACTTGAACAGCATAGACAGACAGTCAGCCAAGTTCAGTGGTGTCCTGTTGGGAGAcccctttttttaaataaagtatcctccactttttgttgttgttgcaaagtGTTGATTTGACCTCTAAAGGAATCCTCTTGTCTGGAAAATCTATTTGTTGTTAAATAATAATACTAGAGCTTAGTTGGAGGTTATTTTCCTGTATGTCAATGTGTGTTGTGGAGTGGAACAGCTTTCAGGATCTTTCAGCATGGAGAGAGTTCTTATCTACATTGTCAGTGATGGGCCACTGCCCTGTCTCATGCTGTCTCTGATTGGTGCTTTTGCCTCTATCTGACATGTTTGGAGCTATGGAGACTTTGCAAAGTAGGGTGTAGTTACAGCAAGTGTGCAATTTGATAACTTTACAATGCAATGCTTACCTATAACCGTAACAATACATAATGAAATCAGAAATATAATGTAGAAGCTAGTACATATGAAGGATCATAGCAGTTTGCTCACTTGTGCAGTCTGAGAGGGCCACGATAGGATGTTTTCTTTTGCTAAGTGAGTCTGTGAGTTGCCAACAATATGCAACACTGCTCCCTTTGAAGGCAGCTCAGAAATACATGCCACATTACTCCAGCTTTTATATAACCGTTAACTCAAACAGGTCATTTTCTCCAAAGATGCATTTATTCTTGTTTTATATATCAAATGGCACTTTCACAAAACTATCATGGAAATCAATACAGTTTGGTTGTTTCTATAGTCTTCTAACACCGACTTTGAAAGGGATTTAAAAGCATTACTGATGGATATTGCTCCTCAGATGTTGTTTTTGATTTGAAGACGCAACAAAGATCCCTGGGCATTCTCATGCTTGTATGTAGAAGGAGCAACATACCAGATTTGTAGACTtgtttttgtttgataatgttttAATCTCTTGTTAATTTTGCCACTGTTTTTAACATGCTGATGTGTGTATCAGTTGTAATTTTTGTTCAATTATTCATTAAGCACAGGGTTTTCAATCACTCTGAGAGATGGAATCCGCAGAAGCTGAGGAGAGTCGCACAGCATGGTTAAACAAGTTATGCTCTTCTATCGCAGGTGCAATGATGTCTGTTGGGGAAAAAACAGTgttcgttttttgttgttgtaatatcgcaaacggacgtggcagttccaccattaaggattccagctttaactATAATGTTTATGTTGTGCAGTGGAAAGAGAAATATGTTGGTGCTTGCAATCAGCCACGAAAGTGTGCAAAGAAAATAATAAATGAAGCCAGAGTATGGATAAACA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU23279 lncRNA downstream 28535 20172534 ~ 20172841 (-) True G19968
TU23278 lncRNA downstream 29335 20171752 ~ 20172041 (-) True G19967
TU23270 lncRNA downstream 31477 20145355 ~ 20169899 (-) True G19960
TU23271 lncRNA downstream 47906 20152650 ~ 20153470 (-) True G19961
TU23268 lncRNA downstream 58766 20142347 ~ 20142610 (-) True G19959
TU23310 lncRNA upstream 27307 20231398 ~ 20231759 (-) True G19994
TU23315 lncRNA upstream 36429 20240520 ~ 20240774 (-) True G19999
TU23316 lncRNA upstream 39283 20243374 ~ 20243645 (-) True G20000
TU23317 lncRNA upstream 39747 20243838 ~ 20244181 (-) True G20001
TU23318 lncRNA upstream 43633 20247724 ~ 20248006 (-) True G20002
XM_021584436.2 mRNA downstream 13959 20180341 ~ 20187417 (-) True LOC110505227
XM_021584354.1 mRNA downstream 14624 20180116 ~ 20186752 (-) False LOC110505227
XM_021584517.2 mRNA downstream 15503 20180341 ~ 20185873 (-) False LOC110505227
XM_021583115.2 mRNA downstream 84075 20096398 ~ 20117301 (-) True LOC110504304
XR_002470564.2 mRNA downstream 266575 19919565 ~ 19934801 (-) False LOC110504151
XM_036965841.1 mRNA upstream 1485 20205576 ~ 20209324 (-) False LOC110505456
XM_021584722.2 mRNA upstream 1485 20205576 ~ 20211949 (-) False LOC110505456
XM_021584887.2 mRNA upstream 1485 20205576 ~ 20211949 (-) False LOC110505456
XM_036965805.1 mRNA upstream 1485 20205576 ~ 20211949 (-) True LOC110505456
XM_021585008.2 mRNA upstream 8829 20212920 ~ 20216964 (-) True LOC110505628
TU21902 other downstream 568759 19630493 ~ 19632617 (-) True LOC110502937
TU21090 other downstream 1315724 18876877 ~ 18885652 (-) True mydgf
TU20791 other downstream 1806516 18391632 ~ 18394860 (-) True LOC110497762
TU20793 other downstream 1809843 18390123 ~ 18391533 (-) False LOC110497762
TU19904 other downstream 2106438 18093155 ~ 18094938 (-) True LOC110497564
TU23634 other upstream 595029 20799120 ~ 20800008 (-) True G20266
TU23821 other upstream 881207 21085298 ~ 21089250 (-) False LOC118945319
TU23826 other upstream 881207 21085298 ~ 21089250 (-) False LOC118945319
TU23814 other upstream 881377 21085468 ~ 21089250 (-) False LOC118945319
TU23817 other upstream 881377 21085468 ~ 21089250 (-) False LOC118945319

Expression Profile