RNA id: TCONS_00026491


Basic Information

Item Value
RNA id TCONS_00026491
length 8162
RNA type mRNA
GC content 0.45
exon number 30
gene id XLOC_013413
representative False

Chromosome Information

Item Value
chromosome id NC_007129.7
NCBI id CM002902.2
chromosome length 51023478
location 21782074 ~ 21910991 (-)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

ATGGCTTCCAGTTCCAGCATGGACATAGAGGGTGCGACCCAGCACCTTCGGGACATCCTAAAACTGGATCGTCCGGGAAATTCGGCCGAAGCGTCTTTGGTCGAGAGCCAGAGAAAACCATCTTTCAATGGAGAGCTGAACGGAGTTCTCGGATCCGATCTCATGGGAGCAGCAATGGTGGAGCCGACGGTGCACAACTCAGACAAACTTAATGGACAGGACACACAGACCATctGTCTTTCAGGAGATGACGGGTCCATTTGTGTCCCAATCAGAGCGAATATTGTGGAAATTGTGTCCAGCCGTGACTCTAGTATTGACAGTAAGGCTCGTGGAAGCAACAAGGTTAAAATTCAGCCAGTGGCCAAATATGACTGGGAGCACAAGTACTACTATGGCAATTTAATAGCCGTGTCCAACACGTACTTGGCTTATGCTATCAGAGGTGCAAACAATCATTCAATGATTCGTGTGCTGCACCTGAGCTCTACAGAGCGCTCTCTGCTGAAGGGCTTCACCGGGGCTGTCACAGACCTTGCCTTTGCCCATCTGGACTCCACCCTGTTGGGATGTGTGGACGAAGCCGGAAACATGTTCATTTGGCAGCTTACAAGCCACAGCAGCAAAATACAAGACGAAGTGATTGTTCACATCCGCAGACCTGAGGACACTCCACTAAACTCTAACCGCAGACTCATCTGGTGTCCCTTCATCCCGGAGGACAATGACGAGAGCCCAGAGGATGCATGTCAGACATTAGCATTGCTTCATGAAGACAgaGCTGAGGTTTGGGACCTCGACATCCTCCGATCAAATAACAGCTCATGGCCTGTGGACGCCACTGAATTGAAAGAGGGTTTCATCACCATTAGAGGGCATGCAGCTCGCATAAGTGAGGGAGCTCTGTCCCCTGATGGTACGGTTTTGGCCACAGCTAGTCATGATGGATATGTCAAATTTTGGCAAATTTACATTGAAGGACAGGACCAACCCCGGTCATTCAAGACTTTGTCGCAAGAAATTGCAAGATGCCTGCATGAATGGCAGCCGCATAATGGACAGCCTCTATCTTGCCTGCTGTTTTGTGACAACCACAAGAAGCAAGATCCAGAcGTTCCATTCTGGCGCTTCCTGATTACTGGAGCTGATCAGAACCAGGAGCTGAAGATGTGGTGCACAGTATCATGGACCTGCCTACAAACCATCAGGTTTTCTCCAGATCCATTTAACTGCGGTGTGCTACCCAGCCTGAAGGCCAGTTTGGACCTTTCTGCAGAATTTCTCATTCTTAGTGATGTTCAAAGGAAGGTATTGTATGTCATGGAGCTGCTGCAGGATCAAGAGAAAGGCCGTGCCAGTTTCACTGCAGTCTCAGAGTTTCTGCTCACACACCCTGTGCTCAGCTTCGGTGTTCAGGATGTTTCTCGTGCTCGCCTGCGCCATACTGAGGTCCTTCCTCCTGAAGAAGAAAGCGAAAGCATGACAGCAGaaggaaaccagggaacctcTGAGTCCAGATCAGGAATTCAGATTAAACTCTACTGTGTGCATACAAAATCACTACAGGATGTGCAGATCTGGTTTCAGCCCAATCAGGGGGACTCCTCTTCACTCTTCATGCCTCAGTCTGGATCACAGGATGGGTTCAGTTTTTCTGACCCGCTGGCTGATCTGAATGTGGAGGCAATGAGCTCTGACAAGGAGTCTGGCGATAGTGGTTCACAAAATGACCTGAGTAAGATTCTGCCTCTTCCAAGTCCCGCTGACTTCATGAGTCCAGCCCCATCAGCCTTGCCCAAACTCATGACCCCGGATGCCTTCATGACACCCAGCGCCTCTATGCCCGCTTCTCCTGGCAGCAGTGCTAGCAGTCTGACCATTGTCACGGCCATGAGCAGCTCAGACAGCGGTGCAAGaggtGGAGATGATCTGACTCAGAGCCctaaaatgtctgttgaatgtgTCAACAGCAGTTTCGCCAATGCAGGCAGTCCAAGATCCAACTCCATCCTCATCTCAGGCCTTGGGGAAAACATCCAGGTTTCCCCTCCAAACCCTCCTCTCTCTCTGGATCTCCAGGCAATAGATCCCATGGTTGTCCCACAGGCGTCTCCAACAAGAGCTCGCTCACCGGATGTCATCTCATCTGCCTCTACTGCAATGTCCCAGGACATACCTGAGATTGCCTCCGAGACGCTGCAGAGGGGACTGTCCGGTGCCAATGCTGATTCGGGCCCCATCCTGCACTCTGACAGCATGGCATCAGCCGCATCAATTCTCCACCTGCTATCTCCAAGGGCCCGGAGCAGCGCTGAGCACAGTTTGTTGCCTCTTGAATTGGGTGCAGCGTCTGTGGATGGAGAGCAGAGACTCAGTAACACACCATCCCTGCTGGAGACTGCTCTCTCACAGGAAAAcgccggagcagccggaggatcCTGTTCTGACAGCAGTGTGAACCACGCATGGCCTGCTGCTCCTGATATCACGCGAGAGACGCGCAACAGCCTGCGAGACAACGGTTTAGGAGACTGCTCTAGGGAGGAAATAAAAGACAGGCACATTTCCTCCCCCTACCATAGACGCACATATCACCTGACTCAGAACGACAGTCAAGATGCAAGTGCAGAGCAGAGTGATCATGACGATGAGGTTGCCAGTCTGGCCTCGTCCTCAGGGAACTGCGGCCCTCGCTCCTCTCACAGACTTCCTGTAAAGGACTGGAAAACATCACCCCGCAGCTCCCCTAAGCTCAAGCGGAAGAGCAAGAAAGATGAAGGAGAGTCCTCGCAATCTAGACAGATTGAAAGCCAGATGAGCACAGAGGTGCAGGACGAGCTCCTGCAGATGCTGCGGAGCCAGCAGAGGGAGATCGCAGAGCTCCGACAGAATCAGCTTGATCTTCTGCAGAGAGTCACTAGCCACATGGACGCAGTGCAGAGCTCCATCATGGCTCACATCGAGCATGCCATGTTAGCTCAGCAAGAACAAGAACAGAGAAGAATGGAGCGAATTCTGGTCGAGGGTCAAAGTCGAAACCAACAGCTCCAGGACCAGCTAGTTCAGCAGCTCGTCCAAACTCTGAACAACAGTCTCTGCAACCGGCTTGAGAAAGTTTTGCGTGAAGAAATGAAGAAAACCGTCCCGCAGACCATATCGAAGAGTCTCGAACCTGTGACCGGCCAGATGAACAGCACCATTGCTGCCAAGTTAACTGCAGTAGAAGGAGCACTCAAAGAAAACGTCACCAAAGTTGTTAAGTCCAAGAACACTACAGATGCCATTGGTCGAGCTGCTGCAGAGGCCATGCAGGGTCCTATTCAGGCAGCCTACAAAGAGACCTTCCAGAGCATTGTCCTGCCTGTGTTTGAGAGAGGCTGTCAGTCCATGTTTCAGCAGATCAATGACAGCTTCAAACAGGGAACCAACGAATACATCCAGCAGTTGGAGACGCACATCAAAAACAGGAAACAAAGAGACCAGGATACACGGGATCCTGTCATTGGCCAGTTACAGCAGATGATTGACAGTCTTCAGAGTTCACAAGACCAGCTGGCGTCTACAGTGACGGCCAGCGTTAGCTCTGACGTCCAGCATCAGCTCCACATGATTGTCGGAAATCTGCAGGACTCAATCCTGACACAGGTGCAGCGTATAGTGAAGGGAGAGGTGAGTTTGGCTATGAAGGAGCAGCAGGCCGCCGTCACCTCCAGTATCATGCAGGCCATGCGCTCAGCCGCAGGAACACCCGTCCCATCCGCACATCTGGACTACCAGGCCCAGCAGGCCAGCATATTacagctactacagcagggccAGCTTAACGAGGCCTTCCAGCAGGCTTTATCCGCAGCAGACCTGAATCTGGTCCTGTACGTGTGCGAGACCATCGACTCCCAACAAGTGTTCGGCCAGCAGCCCTGTCCACTCCACCAGGCCGTCCTTCTGTCCCTCATCCAGCAGCTCTCCACCAACCTGAGCACGCGCACAGAACTCAAGATCAGCTATCTCGAAGATGCTGTGATGAACCTTGACCACGGAGATCCCGTCACCCGAGACCACATGTCCGCAGTGCTGACCCAGGTACGACAGAAGCTCTTCCTGTTCCTGCAGCAGGACGCCCACAGCCCTATGAGCAAGCGTGCACGGCGCCTCATGATGATGCTGCAGGGCCTGGTCAACCACTAGAGCTCTTCACAACCTCTCAGTCTCACTGATGGATATCATGACCTCATGCCATCCTGCTCTCCGCTTTGCTTTTTCTGTGCTCTGCAGCTTATTTGCTCTCCTAAGAAGTTCTGTTGGGAGTCGTAGTCCAGACTTGAACTACAGATATATTGACGTGTTTGGACTACATCTCGCCATTCTTCCCTCTTTCCTTTTCTTAGCTTATGGTTTCATGTGGAATAAATCCTCAGTTTGTATGCATCAGCGCACAAAACGAGACATGGGCTACTTCAGTTATTTTCATTATGCATCGAATGCCGGGAGACCATGAAGACTGTTGTTGGCTTTCATCCTTGAAACATCACGAACAAGACTGGAAAGCTTGAAAGAACAAAACACTTGTGAATGGGATGGTTTCCTGGCGCTGCTTTATTCTCTTCTATTTCTTGTGGTGAAAAGCTGCAGACACCGAGAACTGATCATCACCTCATGAACATTAGCCCTGTTGGTTATTCATTAAGGTTGTATGTAGACCACTAATCCGTATTTGACTCCTTTGATTCGCTGAAAACATTTTGGCCAACCTGCTGCTTTCTCATGTCAGTGGAACATCATTGGAACAGAAGGTTCCaggatttttttgtttctttttttttgtgaacgtTATCAGGCTACGAAAAGGTCAAAGTTTGATTTCTACTCCTACAGTTGAACATCTGGACTACTGAAAAAATTCATCCCTCCTTTTTTTCTTCAATCAAGAAAGCCCTGTAAAATATGTAAGAAGGCTTATTATATTACCCGGGAATGCTAACAATATAGTTATGTAGAATTTCTTCAAAAGGAGTTTGGTAACTTGCAGTACACCTGTAAGTCTCTAGAGGGCAGGCATTTGTGTATCTTCTTTCTAATTTTATATGCAGCTTCTGTGATTTTTCAGTTCTGCGAAATTACACTACCGTGAATGCAGCTAGGCTTCTcgtaaaaaaagttttttctgTAAAACTGTTTCTTCTCTGTGGTAACCCTGAAATAGTTTGGAAAGTGTTGGAGAAAGTGGCTGGAATGTCTTTTTTCTGCTTCGTTCTGCTCAGTTGATTGTATTTGATTTAGACTGAGATTGCCAACACTTGTTATTCATTAAAGAGGGACTATTTGGTCATGCCCTCTGATAGAGGAAGAACAAAAAAAGTGCCTTATCAGACTATATATTGCGTATCAGATACTGGTAATCGTGTCCTTAGACACTGCAGTGATCTACGAAAATTTTCTTTTTCACTAAAACACAGAATTGAAATAAGGAAGGGACAGGTTTGTTACcgaaacattttctttaaaagtgCTGTATTCTGTGATCCGAGTTATTTTTTTTCGGCCATTTATTCCTTAAAAGTTTCATGTTAATGTGATGAGGAAGTGCCGGCCCCAGTGATTGTGTTTGTGTTAACACATTATTCGTTCCCTTGCCATCTTTATTTTTAGAGCTGTGCATATTATATCCATTGCCATTTGCAGCAGTCAGTGTGGCTCATTAGGACATTTATACAGGGTGCGGGCAATGTGTCCTCTTTTGCTTTATTCTTGTATGTTTAAAAATGCTCTGTAACAGACATGAGCCTGCTGTGCAGTTGAGGGTAAATTTGAGGCGCTAATTAGGATATATTAAACTCAGCATGCTTGCATGCTACTGGTGAGAGCCGTGTATTCAAATATGGAGGTACCTGTTTTTATCAATTTAACACCCCATTTTTCTTTAAGCTCTGTAAACCTGGGTTAATcctgttttcatttttctttctcaaATAGTATAGTGTCCAGCCGAGATGACCCGTGATCGGATAGATTGTCtgattcatttttatgttttcagGTTGAAACGTTTCAGAAAAAAAGCGTCTTGTCAGTTTTAAGGTTTCATTGCAGTGCAAGATAAATTGGTTTCGATGCTGTTTTAGACACGTCTGATGATGTTGGGGTTACTATGCTAATACGCAATGCCTTCAGTGTTTGAGGCTTAAATACGaaccttttttttcccccttctctTCAAGAGATTTACATTGCAGGTTGTGTATGAacgtttaattgtttgtttgttttttcatttgtgttttgatttttgttcCTTGTGTTTGCAATTCTGTTGTACATTTTACACTTGTTTCTTTCATCCTAGacattttggaataaaaaaaggaaaacattgTTCAATGTTCAGTTAAGACTGTGTGGATGTTTTCTTTTCTGCAGAATGCTTTTTGTAATAACCTGTTTTTTATAACTTGTCATCAATATGGAGAATTTTGAAATCTGTGACCTCTTAAAGATATAGTTCACCTTAAGATGAACATTCTTTTGTCTTTCACTCACCCTTGATgcaaacctgtttgtgtttcttctgttaaacaaaagactatattttgaagaaagttataatccagcaaccattgacttccatagtaaaagctaatactatggaagtcagtggttgcaTGTTTCCATTTTTTCCAAATATATTTCTCTGCAgtgaacaaaagaatgaaaaggtttataaccactaaAGGCTGAGTATAGTGAGTAGATTAGCATTTTTGGTGAACGGCCCCTTTAATATTTTATGTGACTAAAATTAGGTTGCACTTAATCATATCCCCTGGTGAATTAAATcagggtgaattgaataagctaaattggccgtagtgtatgtgtgaatgcaggagtgtatgggtgtttcccactactgggttgcggatggaagggcatccgccgtgtaaaacatatgctggataagttggcggttcattccgctgtggcaacccctgataaataaagggactataagctgaaaaagaaaatgaattaattaattaaatcatgcGTTCTGCATATCAGTCATTGCAGTAATGTAATACTTTATGGTGTAACAAGAATTGTATATTCTATTATAGATCATAATTTCTTAAGGAGGTTAATTTGCAAAAACACTACCTCAAATGCCTTGATTAAATTATGATTAGTGTAGCAAAAACCATGAATAATGGGCTATAAAAAAGTCAAATGTCAAAGTATTTACACTAAACATAAAAGCACATTTACTTACTAACATAAAATATTCATGTCTCATATATTTAcagttaatgtcaaaattatttgcccttctgggaatttcttttattttcccaatattttgcaaatgatgtctgagcaagaaaattttcagtatttcctgtaatatttttttcttctggagaaagtcttatttgttttatttcggttagagtAAAAGCagcttttgatttaaaaaaaataataattttatgctCAGTATTACTAGCAATATTtcttttttcgattgtctacagaacaaaccactcttAGACTAtgcaatgacttgtctaattaccgtAACCTAGTTAAGCACTTTCAGCTGAAAACTAGTATACTGAAAAAtgcctagtaaaatattatgccctgtcatcatggcaatgatgaAAACTAGtaaaaaaactattgtttagaaatgtgttctctaaacagaaatttggggaaagaaatatacaggagggggggctaaaaattatgacttcaactgtatatataaatatataatatatacacacactacgtGAGCTCCTGACGTTACTCTAGTGTTATGTAATATTTGCTTATGGTTTATTAATGAAAGTGTATGTAGACCAGCAGCGTGTAGTAGTGCGCGAGTGCAATGAAAAAGTTGTGGTTGAAACAAAGCTCTGCTAAACGCGCAGTCGTGCTCCCGCATGCAGCCTCAGCCTCCTCCCCTTTACTACAGGATACGCGCGCTAGTGAATCATTCATCAGTCCAGCGCAATGCGAGCTGATGCTCCGAGTTTCTCTTAAATGAACAGCCGCATCTGTGACTTCACTGCCTTCAGTTTCTGTTCGCCGGGATCTCTTCAGGATGACACCTCTCCTCTGCAACGCCTGCCTCATCCTGCCTGTTGCTTTACATCTGC

Function

GO:

id name namespace
GO:0007399 nervous system development biological_process

KEGG: NA

ZFIN:

id description
ZDB-GENE-030131-5032 Predicted to be involved in deadenylation-independent decapping of nuclear-transcribed mRNA. Predicted to be located in cytoplasm and nucleus. Predicted to be active in P-body. Orthologous to human EDC4 (enhancer of mRNA decapping 4).

Ensembl:

ensembl_id ENSDART00000089787

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00026963 lncRNA downstream 690626 21164826 ~ 21168118 (-) False XLOC_013403
TCONS_00026962 lncRNA downstream 690626 21164826 ~ 21168118 (-) True XLOC_013403
TCONS_00026461 lncRNA downstream 1250507 20598064 ~ 20608237 (-) False XLOC_013393
TCONS_00027295 lncRNA downstream 1538871 20285665 ~ 20319873 (-) False XLOC_013388
TCONS_00026498 lncRNA upstream 21262 21932253 ~ 21936575 (-) False XLOC_013415
TCONS_00026499 lncRNA upstream 33214 21944205 ~ 21947172 (-) True XLOC_013415
TCONS_00027296 lncRNA upstream 639604 22550595 ~ 22552314 (-) True XLOC_013420
TCONS_00027297 lncRNA upstream 1275738 23186729 ~ 23188209 (-) False XLOC_013428
TCONS_00027298 lncRNA upstream 1275738 23186729 ~ 23188268 (-) False XLOC_013428
TCONS_00026490 mRNA downstream 52131 21784119 ~ 21806613 (-) False XLOC_013413
TCONS_00026488 mRNA downstream 109778 21731733 ~ 21748966 (-) True XLOC_013412
TCONS_00026486 mRNA downstream 109936 21728194 ~ 21748808 (-) False XLOC_013412
TCONS_00026487 mRNA downstream 112323 21731733 ~ 21746421 (-) False XLOC_013412
TCONS_00026484 mRNA downstream 133106 21688266 ~ 21725638 (-) True XLOC_013410
TCONS_00026495 mRNA upstream 2694 21913685 ~ 21929451 (-) False XLOC_013414
TCONS_00026496 mRNA upstream 3004 21913995 ~ 21929426 (-) True XLOC_013414
TCONS_00026497 mRNA upstream 20750 21931741 ~ 21950751 (-) False XLOC_013415
TCONS_00026500 mRNA upstream 117683 22028674 ~ 22094102 (-) True XLOC_013416
TCONS_00026502 mRNA upstream 238570 22149561 ~ 22150663 (-) True XLOC_013418
TCONS_00026485 other downstream 138693 21712296 ~ 21720051 (-) True XLOC_013411
TCONS_00026472 other downstream 834173 21020911 ~ 21024571 (-) True XLOC_013400
TCONS_00026468 other downstream 1012431 20846190 ~ 20846313 (-) True XLOC_013398
TCONS_00026464 other downstream 1224821 20633789 ~ 20633923 (-) True XLOC_013395
TCONS_00026460 other downstream 1264502 20585090 ~ 20594242 (-) False XLOC_013393
TCONS_00026501 other upstream 172781 22083772 ~ 22083886 (-) True XLOC_013417
TCONS_00026504 other upstream 639604 22550595 ~ 22552256 (-) False XLOC_013420
TCONS_00026513 other upstream 828741 22739732 ~ 22743366 (-) False XLOC_013426
TCONS_00026516 other upstream 948488 22859479 ~ 22862467 (-) True XLOC_013427
TCONS_00026523 other upstream 1962353 23873344 ~ 24023013 (-) False XLOC_013432

Expression Profile

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