RNA id: TCONS_00026499


Basic Information

Item Value
RNA id TCONS_00026499
length 564
lncRNA type retained_intron
GC content 0.41
exon number 4
gene id XLOC_013415
representative True

Chromosome Information

Item Value
chromosome id NC_007129.7
NCBI id CM002902.2
chromosome length 51023478
location 21931741 ~ 21950751 (-)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

AGGTTTACCAAGAAGTCTTTGGCCATTTAATTGAAGAATTTAAAACCTATAAGCCTATTTTGTCTGCCATCAAAAAGGAGTATGACATCACATTAGCACATCTGCGAGATCAGATCAGGGATCTGCTACCGCTACGGCCGAAGCTGGTGCTCGTGTCAGAACAATGTGACAAGAAGATTCTGGAAATGAGAGTACAGGAAAGAGAGGAGGTTCGAGCTCTGAAGCAAGAGTGCAGGCATCTGCAGAGCGTCATTGAAAGCATGAGGTCACAACAGAGTGCTCTGCAGATTCAGGTTGATCATCTAAAAGAGGATCTAGCCACCCAGTATCAGCTCTACAGGGACGAACGTGATGCACGAAAGCTGCTCATCACCAGAATCAGCACAATGCAATCTACCCAAGATGCCGaacatgatgataataatgaaggttACGTTAATAGTGGAgtctgaaaaaaaacaataaacatgaaaacaaaatactaTTTGAATTTATGTATCAATATAAGGACTTGAGCAGAGGTGTGACGGTAGGCAAAGTTTTACATGTTATGCCATATTTTCT

Function

GO:

id name namespace
GO:0007163 establishment or maintenance of cell polarity biological_process
GO:0005737 cytoplasm cellular_component

KEGG: NA

ZFIN:

id description
ZDB-GENE-070424-39 Predicted to act upstream of or within establishment or maintenance of cell polarity. Predicted to be located in bicellular tight junction and membrane. Predicted to be active in cytoplasm. Orthologous to human TSNAXIP1 (translin associated factor X interacting protein 1).

Ensembl:

ensembl_id ENSDART00000148104

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00026498 lncRNA downstream 7630 21932253 ~ 21936575 (-) False XLOC_013415
TCONS_00026963 lncRNA downstream 776087 21164826 ~ 21168118 (-) False XLOC_013403
TCONS_00026962 lncRNA downstream 776087 21164826 ~ 21168118 (-) True XLOC_013403
TCONS_00026461 lncRNA downstream 1335968 20598064 ~ 20608237 (-) False XLOC_013393
TCONS_00027295 lncRNA downstream 1624332 20285665 ~ 20319873 (-) False XLOC_013388
TCONS_00027296 lncRNA upstream 603423 22550595 ~ 22552314 (-) True XLOC_013420
TCONS_00027297 lncRNA upstream 1239557 23186729 ~ 23188209 (-) False XLOC_013428
TCONS_00027298 lncRNA upstream 1239557 23186729 ~ 23188268 (-) False XLOC_013428
TCONS_00027300 lncRNA upstream 1239557 23186729 ~ 23188301 (-) False XLOC_013428
TCONS_00027299 lncRNA upstream 1239557 23186729 ~ 23188301 (-) False XLOC_013428
TCONS_00026495 mRNA downstream 14754 21913685 ~ 21929451 (-) False XLOC_013414
TCONS_00026496 mRNA downstream 14779 21913995 ~ 21929426 (-) True XLOC_013414
TCONS_00026492 mRNA downstream 33214 21858744 ~ 21910991 (-) False XLOC_013413
TCONS_00026500 mRNA upstream 81502 22028674 ~ 22094102 (-) True XLOC_013416
TCONS_00026502 mRNA upstream 202389 22149561 ~ 22150663 (-) True XLOC_013418
TCONS_00026503 mRNA upstream 458535 22405707 ~ 22414565 (-) True XLOC_013419
TCONS_00026505 mRNA upstream 748235 22695407 ~ 22696357 (-) False XLOC_013421
TCONS_00026506 mRNA upstream 748239 22695411 ~ 22696170 (-) True XLOC_013421
TCONS_00026485 other downstream 224154 21712296 ~ 21720051 (-) True XLOC_013411
TCONS_00026472 other downstream 919634 21020911 ~ 21024571 (-) True XLOC_013400
TCONS_00026468 other downstream 1097892 20846190 ~ 20846313 (-) True XLOC_013398
TCONS_00026464 other downstream 1310282 20633789 ~ 20633923 (-) True XLOC_013395
TCONS_00026460 other downstream 1349963 20585090 ~ 20594242 (-) False XLOC_013393
TCONS_00026501 other upstream 136600 22083772 ~ 22083886 (-) True XLOC_013417
TCONS_00026504 other upstream 603423 22550595 ~ 22552256 (-) False XLOC_013420
TCONS_00026513 other upstream 792560 22739732 ~ 22743366 (-) False XLOC_013426
TCONS_00026516 other upstream 912307 22859479 ~ 22862467 (-) True XLOC_013427
TCONS_00026523 other upstream 1926172 23873344 ~ 24023013 (-) False XLOC_013432

Expression Profile

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