RNA id: TCONS_00027296


Basic Information

Item Value
RNA id TCONS_00027296
length 1720
lncRNA type intronic
GC content 0.32
exon number 1
gene id XLOC_013420
representative True

Chromosome Information

Item Value
chromosome id NC_007129.7
NCBI id CM002902.2
chromosome length 51023478
location 22550595 ~ 22552314 (-)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

GCTGTGTTGTATTTTGGAGTTCATTCTCTGGTGTTCAGAAACGTGCTTTAACTCCTTACTGGAGTTAAATTTTTAGAAAGTCCGCCATTACACAACTCTGCCGAGCAGCACATGAGAACTGGAGTTATGTTCTTCTTTGTGAGGTAGGTAAAAGTGCATTGTTATACAATTCTAAAAGCTTTTTCTAAATGTTGGATGTTTTGTAGCAGAAGTGTGTTTTGCTGTAGCTGTTTCATTTTGTACTGTGAGGCTAGTGACTGCATGTGGCTAACTTAGCATAGCATGTTAGCTTTTCCAATGtggcagttttaaaaaaaaaaaaaaatgttgtggatTTGAACAAGCTAACACTAGCTAATAATCTTTTCTTCCCCTGTGTTTCTAAAAATATGTGTTCTGCTGTCAAAAAGAAGTGGTAGGCCTACTTGATCAGATGGAGAAACCTGCTGTTCACATTTCAAATAGGCTAACTTACACAACGAGGTAATGTCAATATCTTTTATCCAGCAATAGAGCTTTATGTCTGTAAGATTTAATATGTGTAATATTGCTCATGAAATGTTTTGGATTGTATCATGATTTAGTCGTGACCGTGAGAGTATGCTGTTTTcagctatatttacattacattttcaatCACACTAACATAAGTTGTTAAATAACATTTATCTTTTTAATTTCAGGCCACGATGCTGATAAAAGTGCAATTTGGAggcaagaaaaaatatattaaactggaAGAAGATTGTTTCTTGGATTTTTTCAGTGCGGGTGAGTTTTAGTgtaacagagttttttttttttattataataataataacagtcattttgaaatttatttgataaattataCATTGTTGTTATGTTGTAGTCCAGCACAAGTTTGTGATACCAGAGGATACAGCATCGAAAGTCACAGATGACCATGGCATAGAGGTGGATGAGGATGTATTTCAAGAACTTGCAACAACCAAAGAAACATGTCATCCATACTAATGATGGTAGgttatttaagaacatttttataaattttgaaaGTTGGTCTCATGACTCAAAGTGAAAGTGtgcatttgttgttttttcatcagATTTGACTGTCCTGCAGCAAGGGGCTGTTAAAGTGCCCTCCTCCCCAAGTATGACAGATACATTGTCTGTGTCAAGCAGTTTGAGCAGCAGTGATTCTGGATCTCAAATTATTCAACCTTTAATGGGCAGTGtccaaaaaaatgtaagtttttttttaaacttccatATACATAGAAATTATACcgtaaacattacaaaataacgttacaaaatgaatgcattttaaagtaaaacatagtataaacacagttattagatttagttttttttgttaaaaaaaatgttaattttggttATCtttctaaatacttttttttcttcgtttcagAAAATCGAGCAAATTCTAACTTCAAAGCCAGCAGAGTTGACTGTGATTGAGGAGtatgacaagatatttttttactgcttttGATTCCTgtgaagttaattttatataatgtaatgtgttgATTGTCTCATGCAATTTTACTAAGTCATTGGTTTTAGTTGGCACTAGCTGCTAACATAtattaattgtaaatgttttgctGTTAGATTTAATGCTTTGATGACAATTAATTTCAAAGTGTGTACATCGATGGAAATTCTAAATCTAATGTGTGGATTTGCATGAATAAAAGCAGTAAGTAAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00026499 lncRNA downstream 603423 21944205 ~ 21947172 (-) True XLOC_013415
TCONS_00026498 lncRNA downstream 614020 21932253 ~ 21936575 (-) False XLOC_013415
TCONS_00026963 lncRNA downstream 1382477 21164826 ~ 21168118 (-) False XLOC_013403
TCONS_00026962 lncRNA downstream 1382477 21164826 ~ 21168118 (-) True XLOC_013403
TCONS_00026461 lncRNA downstream 1942358 20598064 ~ 20608237 (-) False XLOC_013393
TCONS_00027297 lncRNA upstream 634415 23186729 ~ 23188209 (-) False XLOC_013428
TCONS_00027298 lncRNA upstream 634415 23186729 ~ 23188268 (-) False XLOC_013428
TCONS_00027300 lncRNA upstream 634415 23186729 ~ 23188301 (-) False XLOC_013428
TCONS_00027299 lncRNA upstream 634415 23186729 ~ 23188301 (-) False XLOC_013428
TCONS_00026517 lncRNA upstream 634415 23186729 ~ 23189925 (-) False XLOC_013428
TCONS_00026503 mRNA downstream 136030 22405707 ~ 22414565 (-) True XLOC_013419
TCONS_00026502 mRNA downstream 399932 22149561 ~ 22150663 (-) True XLOC_013418
TCONS_00026500 mRNA downstream 456493 22028674 ~ 22094102 (-) True XLOC_013416
TCONS_00026497 mRNA downstream 599844 21931741 ~ 21950751 (-) False XLOC_013415
TCONS_00026495 mRNA downstream 621144 21913685 ~ 21929451 (-) False XLOC_013414
TCONS_00026505 mRNA upstream 143093 22695407 ~ 22696357 (-) False XLOC_013421
TCONS_00026506 mRNA upstream 143097 22695411 ~ 22696170 (-) True XLOC_013421
TCONS_00026507 mRNA upstream 148716 22701030 ~ 22701983 (-) False XLOC_013422
TCONS_00026508 mRNA upstream 148755 22701069 ~ 22701800 (-) True XLOC_013422
TCONS_00026509 mRNA upstream 160324 22712638 ~ 22713621 (-) False XLOC_013423
TCONS_00026501 other downstream 466709 22083772 ~ 22083886 (-) True XLOC_013417
TCONS_00026485 other downstream 830544 21712296 ~ 21720051 (-) True XLOC_013411
TCONS_00026472 other downstream 1526024 21020911 ~ 21024571 (-) True XLOC_013400
TCONS_00026468 other downstream 1704282 20846190 ~ 20846313 (-) True XLOC_013398
TCONS_00026464 other downstream 1916672 20633789 ~ 20633923 (-) True XLOC_013395
TCONS_00026513 other upstream 187418 22739732 ~ 22743366 (-) False XLOC_013426
TCONS_00026516 other upstream 307165 22859479 ~ 22862467 (-) True XLOC_013427
TCONS_00026523 other upstream 1321030 23873344 ~ 24023013 (-) False XLOC_013432
TCONS_00026525 other upstream 1721114 24273428 ~ 24476114 (-) False XLOC_013435
TCONS_00026526 other upstream 1763867 24316181 ~ 24316299 (-) True XLOC_013436

Expression Profile

//