RNA id: TU24541



Basic Information


Item Value
RNA id TU24541
length 721
lncRNA type antisense_over
GC content 0.38
exon number 4
gene id G21063
representative True

Chromosome Information


Item Value
chromosome id NC_048565.1
NCBI id CM023219.2
chromosome length 95772356
location 21793406 ~ 21800722 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence


TTGATCTCATCAGGCTTTCTCCTCTTCTCATAGATGAAGATGATACTGACCAGGATGATGACCTCAGCCACTATGCCCAGGAAGGGCCAGAGGGCGGCCAGCCGGCTGCGGACGCGCAGGTGGACCTTGTCGGAGGTCGAGCCGAACTCGCTCGTGCCGTCGCAAATGTAGTTGCCTATGTCCATGGCGATGTCCAGGTTGTCAATGGTCAGGGTGGTCCTGTTGGGGGTGCTCTTGATCTCATACCTGTCGGTACCGTTGGTGATGGCCGTCTTATCTTCTCCCTCCAGTTTGTACCACTTCCAGTCAGTGGGCAGTGGGTATCCATAACTAATACACACCAGCACACCCTTGTCCTTCTCGTTACCATGCTCAGAGCGTTTGTAGGCAGAGACAAGGGGAGCAGTTTTGACTTCAATGGTTGTTTTCACCTCGGGCTCAGAAAGGAAGACGCACTCATACAATCCACCGGAATGGGAATCGATTTTAGCCAAGGTGTGCTCGGTGTAGAGAGTTGGCAAGTTATGCTTGGATGACTCGATCACTTTGCCGTTCCTCATCCAGTAGTGGCCTTTGACTGTGGACGGGGGGTCGGTCAGTTTGCATGAGAGGACAGCAGAGGTCTGGTTGTATACCTCCATAGGTTCAGCTTCAATTAAGGGATCTGTAGATGCACATAAAGTGAATATATTAAAAAGCCATCCTTTGATATAAACACATC

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU24496 lncRNA downstream 100048 21694330 ~ 21699240 (-) True G21024
TU24488 lncRNA downstream 113992 21684923 ~ 21685296 (-) True G21016
TU24486 lncRNA downstream 164265 21634545 ~ 21635023 (-) True G21014
TU24448 lncRNA downstream 181915 21575784 ~ 21617373 (-) True G20981
TU24444 lncRNA downstream 223888 21574949 ~ 21575400 (-) True G20980
TU24538 lncRNA upstream 1810 21802532 ~ 21805075 (-) True G21062
TU24633 lncRNA upstream 80168 21880890 ~ 21902419 (-) True G21151
TU24638 lncRNA upstream 85927 21886649 ~ 21887089 (-) True G21155
TU24666 lncRNA upstream 126914 21927636 ~ 21927878 (-) True G21183
TU24689 lncRNA upstream 138386 21939108 ~ 21939403 (-) True G21204
LOC110532081 mRNA downstream 66002 21686077 ~ 21733286 (-) True LOC110532081
XM_021588545.2 mRNA downstream 194859 21587517 ~ 21604429 (-) False LOC110508066
XM_021588588.2 mRNA downstream 194859 21587517 ~ 21604429 (-) True LOC110508066
XM_021587980.2 mRNA downstream 233565 21535882 ~ 21565723 (-) False LOC110507736
XM_036947495.1 mRNA downstream 430400 21366154 ~ 21368888 (-) True cirbp
XM_021589510.2 mRNA upstream 310282 22111004 ~ 22203625 (-) True LOC110508721
LOC118966627 mRNA upstream 425483 22226205 ~ 22231598 (-) True LOC118966627
XR_002471392.2 mRNA upstream 592256 22392978 ~ 22400311 (-) False LOC110508988
XR_002471395.2 mRNA upstream 592256 22392978 ~ 22400323 (-) False LOC110508988
XM_021590202.2 mRNA upstream 633953 22434675 ~ 22437595 (-) True LOC110509244
TU24399 other downstream 251515 21535933 ~ 21547773 (-) True LOC110507736
TU23814 other downstream 710038 21085468 ~ 21089250 (-) False LOC118945319
TU25520 other upstream 581148 22381870 ~ 22382208 (-) True G21993
TU25921 other upstream 1039123 22839845 ~ 22843305 (-) True G22350
TU26999 other upstream 1823304 23624026 ~ 23624349 (-) True G23394
TU27396 other upstream 2021978 23822700 ~ 23826491 (-) True LOC110511130
TU28304 other upstream 2422185 24222907 ~ 24226490 (-) True G24542

Expression Profile