RNA id: TU24695


Basic Information

Item Value
RNA id TU24695
length 357
lncRNA type inter_gene
GC content 0.48
exon number 1
gene id G21210
representative True

Chromosome Information

Item Value
chromosome id NC_048565.1
NCBI id CM023219.2
chromosome length 95772356
location 21948188 ~ 21948544 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

aaaccatttcttttttaatttttcgttcaccttttacacctgttgttttgggccatccctggctagtttgtcataatccttccattaattggtctagtaattctatcctctcctggaatgtctcttgtcatgtgaaatgtttaatgtctgctatccctcctgtttcctctgtctcttcttcacaggaggagcctggtgatttgacaggggtgccggaggaatatcacgatctgcgcacggtgttcagtcggtccagggccacctctcttcctccacaccggtcgtatgattgtagtattgatctccttccgggaaccactcccccccggggtagactatactctctgtcggctcccg

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU24688 lncRNA upstream 8859 21939123 ~ 21939329 (+) True G21203
TU24369 lncRNA upstream 61104 21886629 ~ 21887084 (+) True G20920
TU24326 lncRNA upstream 115228 21831910 ~ 21832960 (+) True G20880
TU24293 lncRNA upstream 183001 21762239 ~ 21765187 (+) True G20848
TU24292 lncRNA upstream 185754 21759701 ~ 21762434 (+) False G20848
TU24699 lncRNA downstream 3987 21952531 ~ 21952872 (+) True G21214
TU24715 lncRNA downstream 14395 21962939 ~ 21963157 (+) True G21229
TU24786 lncRNA downstream 103541 22052085 ~ 22052352 (+) True G21299
TU25037 lncRNA downstream 291347 22239891 ~ 22243715 (+) True G21528
TU25042 lncRNA downstream 300807 22249351 ~ 22249637 (+) True G21533
XM_021589263.2 mRNA upstream 36672 21809564 ~ 21911516 (+) True LOC110508592
XR_005041163.1 mRNA upstream 121059 21819189 ~ 21827129 (+) True LOC118946025
XM_036969779.1 mRNA upstream 145285 21792456 ~ 21802903 (+) False LOC110508526
XM_036969893.1 mRNA upstream 145285 21792539 ~ 21802903 (+) False LOC110508526
XM_036969836.1 mRNA upstream 145285 21793376 ~ 21802903 (+) True LOC110508526
XM_021589385.2 mRNA downstream 76085 22024629 ~ 22107857 (+) False LOC110508655
XM_036970165.1 mRNA downstream 76102 22024646 ~ 22107857 (+) True LOC110508655
XM_021589846.2 mRNA downstream 263788 22212332 ~ 22226104 (+) True LOC110508905
XM_036970373.1 mRNA downstream 332545 22281089 ~ 22422282 (+) True LOC110532091
XM_021590144.2 mRNA downstream 483766 22432310 ~ 22435150 (+) False zgc:110339
TU24207 other upstream 380000 21567545 ~ 21568188 (+) True G20773
TU22579 other upstream 1638290 20309425 ~ 20309898 (+) False G19400
TU22556 other upstream 1671293 20276590 ~ 20276895 (+) True G19380
TU22535 other upstream 1705313 20242645 ~ 20242875 (+) True G19359
TU22214 other upstream 2032356 19915586 ~ 19915832 (+) True G19083
TU26709 other downstream 1589852 23538396 ~ 23538863 (+) True G23109
TU26735 other downstream 1626048 23574592 ~ 23574995 (+) True G23135
TU27205 other downstream 1924477 23873021 ~ 23899805 (+) False LOC110511358
TU27206 other downstream 1924477 23873021 ~ 23899805 (+) True LOC110511358
TU27861 other downstream 2556111 24504655 ~ 24506116 (+) True ccl4

Expression Profile