RNA id: TU24699


Basic Information

Item Value
RNA id TU24699
length 342
lncRNA type inter_gene
GC content 0.44
exon number 1
gene id G21214
representative True

Chromosome Information

Item Value
chromosome id NC_048565.1
NCBI id CM023219.2
chromosome length 95772356
location 21952531 ~ 21952872 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

GTCTCAAGACATCACTAGgaaaatctggcccaaccaaatcatcacaaaacaaaaataaaaatataccaccttttggaaagacaccacaaacaaatctaagtaaacttcaatactatttggctctaaacagacagttcatggtggcagactatctgaccactgtgactgaggaaaacactgactaggtacagactcagtgagcacagtctggctatagagaccggtcttCACaggcaaacctggctgcccagagaggacaggctgtgctcactctgctccaggggagaagcagagacagagcTACATTTCCTATTTCACAgtaacaaatactcagacctaaga

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU24695 lncRNA upstream 3987 21948188 ~ 21948544 (+) True G21210
TU24688 lncRNA upstream 13202 21939123 ~ 21939329 (+) True G21203
TU24369 lncRNA upstream 65447 21886629 ~ 21887084 (+) True G20920
TU24326 lncRNA upstream 119571 21831910 ~ 21832960 (+) True G20880
TU24293 lncRNA upstream 187344 21762239 ~ 21765187 (+) True G20848
TU24715 lncRNA downstream 10067 21962939 ~ 21963157 (+) True G21229
TU24786 lncRNA downstream 99213 22052085 ~ 22052352 (+) True G21299
TU25037 lncRNA downstream 287019 22239891 ~ 22243715 (+) True G21528
TU25042 lncRNA downstream 296479 22249351 ~ 22249637 (+) True G21533
TU25054 lncRNA downstream 314883 22267755 ~ 22267975 (+) True G21545
XM_021589263.2 mRNA upstream 41015 21809564 ~ 21911516 (+) True LOC110508592
XR_005041163.1 mRNA upstream 125402 21819189 ~ 21827129 (+) True LOC118946025
XM_036969779.1 mRNA upstream 149628 21792456 ~ 21802903 (+) False LOC110508526
XM_036969893.1 mRNA upstream 149628 21792539 ~ 21802903 (+) False LOC110508526
XM_036969836.1 mRNA upstream 149628 21793376 ~ 21802903 (+) True LOC110508526
XM_021589385.2 mRNA downstream 71757 22024629 ~ 22107857 (+) False LOC110508655
XM_036970165.1 mRNA downstream 71774 22024646 ~ 22107857 (+) True LOC110508655
XM_021589846.2 mRNA downstream 259460 22212332 ~ 22226104 (+) True LOC110508905
XM_036970373.1 mRNA downstream 328217 22281089 ~ 22422282 (+) True LOC110532091
XM_021590144.2 mRNA downstream 479438 22432310 ~ 22435150 (+) False zgc:110339
TU24207 other upstream 384343 21567545 ~ 21568188 (+) True G20773
TU22579 other upstream 1642633 20309425 ~ 20309898 (+) False G19400
TU22556 other upstream 1675636 20276590 ~ 20276895 (+) True G19380
TU22535 other upstream 1709656 20242645 ~ 20242875 (+) True G19359
TU22214 other upstream 2036699 19915586 ~ 19915832 (+) True G19083
TU26709 other downstream 1585524 23538396 ~ 23538863 (+) True G23109
TU26735 other downstream 1621720 23574592 ~ 23574995 (+) True G23135
TU27205 other downstream 1920149 23873021 ~ 23899805 (+) False LOC110511358
TU27206 other downstream 1920149 23873021 ~ 23899805 (+) True LOC110511358
TU27861 other downstream 2551783 24504655 ~ 24506116 (+) True ccl4

Expression Profile