RNA id: TU25441



Basic Information


Item Value
RNA id TU25441
length 204
lncRNA type inter_gene
GC content 0.44
exon number 1
gene id G21917
representative True

Chromosome Information


Item Value
chromosome id NC_048565.1
NCBI id CM023219.2
chromosome length 95772356
location 22267762 ~ 22267965 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence


gtggaagaaggtgctctggtcagatgaaaccaaaattgaactttttggcaacaatgcaaaacggtatgtttggcgtaaaagcaacacagctgaacacaccatccccactgtcaaacatggtggtggcagcatcatggtttgggcctgcttttcttcagcagggacagggaagatggttaaaattgatgggaagatggatggagc

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU25437 lncRNA downstream 2333 22265216 ~ 22265429 (-) True G21913
TU25428 lncRNA downstream 14510 22252962 ~ 22253252 (-) True G21904
TU25424 lncRNA downstream 18695 22248833 ~ 22249067 (-) True G21900
TU25349 lncRNA downstream 52318 22212443 ~ 22215444 (-) True G21827
TU25352 lncRNA downstream 150093 22117161 ~ 22117669 (-) True G21830
TU25479 lncRNA upstream 49517 22317482 ~ 22317947 (-) True G21954
TU25481 lncRNA upstream 51911 22319876 ~ 22320089 (-) True G21956
TU25489 lncRNA upstream 66872 22334837 ~ 22335094 (-) True G21964
TU25507 lncRNA upstream 92678 22360643 ~ 22360908 (-) True G21982
TU25513 lncRNA upstream 98858 22366823 ~ 22367212 (-) True G21988
LOC118966627 mRNA downstream 36164 22226205 ~ 22231598 (-) True LOC118966627
XM_021589510.2 mRNA downstream 64137 22111004 ~ 22203625 (-) True LOC110508721
LOC110532081 mRNA downstream 534476 21686077 ~ 21733286 (-) True LOC110532081
XM_021588545.2 mRNA downstream 663333 21587517 ~ 21604429 (-) False LOC110508066
XR_002471392.2 mRNA upstream 125013 22392978 ~ 22400311 (-) False LOC110508988
XR_002471395.2 mRNA upstream 125013 22392978 ~ 22400323 (-) False LOC110508988
XM_021590202.2 mRNA upstream 166710 22434675 ~ 22437595 (-) True LOC110509244
XM_021590377.2 mRNA upstream 195430 22463395 ~ 22487546 (-) False LOC110509312
XM_021590261.2 mRNA upstream 195430 22463395 ~ 22487547 (-) False LOC110509312
TU24399 other downstream 719989 21535933 ~ 21547773 (-) True LOC110507736
TU23814 other downstream 1178512 21085468 ~ 21089250 (-) False LOC118945319
TU25520 other upstream 113905 22381870 ~ 22382208 (-) True G21993
TU25921 other upstream 571880 22839845 ~ 22843305 (-) True G22350
TU26999 other upstream 1356061 23624026 ~ 23624349 (-) True G23394
TU27396 other upstream 1554735 23822700 ~ 23826491 (-) True LOC110511130
TU28304 other upstream 1954942 24222907 ~ 24226490 (-) True G24542

Expression Profile