RNA id: TU25481



Basic Information


Item Value
RNA id TU25481
length 214
lncRNA type intronic
GC content 0.37
exon number 1
gene id G21956
representative True

Chromosome Information


Item Value
chromosome id NC_048565.1
NCBI id CM023219.2
chromosome length 95772356
location 22319876 ~ 22320089 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence


CTAGTATACTATAGTTAtcacgtttcacattggatttattaactgcAAAAAGGTAAGACGTGTTTTTAATTCTAGTGCACCTctacacacacaagcttgttagctagctaactaatgttCGCTCTGGTCCAACGTTAACCAACTCTcagaagttcaaagacattcaaagttcctccatagaagccactcatcagtaggtataattctgtgggcc

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU25479 lncRNA downstream 1929 22317482 ~ 22317947 (-) True G21954
TU25441 lncRNA downstream 51911 22267762 ~ 22267965 (-) True G21917
TU25437 lncRNA downstream 54447 22265216 ~ 22265429 (-) True G21913
TU25428 lncRNA downstream 66624 22252962 ~ 22253252 (-) True G21904
TU25424 lncRNA downstream 70809 22248833 ~ 22249067 (-) True G21900
TU25489 lncRNA upstream 14748 22334837 ~ 22335094 (-) True G21964
TU25507 lncRNA upstream 40554 22360643 ~ 22360908 (-) True G21982
TU25513 lncRNA upstream 46734 22366823 ~ 22367212 (-) True G21988
TU25518 lncRNA upstream 55692 22375781 ~ 22376012 (-) True G21991
TU25521 lncRNA upstream 64257 22384346 ~ 22384678 (-) True G21994
LOC118966627 mRNA downstream 88278 22226205 ~ 22231598 (-) True LOC118966627
XM_021589510.2 mRNA downstream 116251 22111004 ~ 22203625 (-) True LOC110508721
LOC110532081 mRNA downstream 586590 21686077 ~ 21733286 (-) True LOC110532081
XM_021588545.2 mRNA downstream 715447 21587517 ~ 21604429 (-) False LOC110508066
XR_002471392.2 mRNA upstream 72889 22392978 ~ 22400311 (-) False LOC110508988
XR_002471395.2 mRNA upstream 72889 22392978 ~ 22400323 (-) False LOC110508988
XM_021590202.2 mRNA upstream 114586 22434675 ~ 22437595 (-) True LOC110509244
XM_021590377.2 mRNA upstream 143306 22463395 ~ 22487546 (-) False LOC110509312
XM_021590261.2 mRNA upstream 143306 22463395 ~ 22487547 (-) False LOC110509312
TU24399 other downstream 772103 21535933 ~ 21547773 (-) True LOC110507736
TU23814 other downstream 1230626 21085468 ~ 21089250 (-) False LOC118945319
TU25520 other upstream 61781 22381870 ~ 22382208 (-) True G21993
TU25921 other upstream 519756 22839845 ~ 22843305 (-) True G22350
TU26999 other upstream 1303937 23624026 ~ 23624349 (-) True G23394
TU27396 other upstream 1502611 23822700 ~ 23826491 (-) True LOC110511130
TU28304 other upstream 1902818 24222907 ~ 24226490 (-) True G24542

Expression Profile