RNA id: TU25507



Basic Information


Item Value
RNA id TU25507
length 266
lncRNA type intronic
GC content 0.41
exon number 1
gene id G21982
representative True

Chromosome Information


Item Value
chromosome id NC_048565.1
NCBI id CM023219.2
chromosome length 95772356
location 22360643 ~ 22360908 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence


attttgggagtttctcccattcttctctgcagatcctctcaagctctgtcaggttggatggggagcattgctgaacagcaattttcaggtctctccagagatgttagatcgggttcaagtccaggctctggctgggccactcaaggcattcagagacttgtctcgaagccactccagtgttgtcttggctgtgtgcttagggtcgttatgttgtaaggtgaaccttcgccacagtctgagcgctctggagcaggatttcatcaagg

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU25489 lncRNA downstream 25549 22334837 ~ 22335094 (-) True G21964
TU25481 lncRNA downstream 40554 22319876 ~ 22320089 (-) True G21956
TU25479 lncRNA downstream 42696 22317482 ~ 22317947 (-) True G21954
TU25441 lncRNA downstream 92678 22267762 ~ 22267965 (-) True G21917
TU25437 lncRNA downstream 95214 22265216 ~ 22265429 (-) True G21913
TU25513 lncRNA upstream 5915 22366823 ~ 22367212 (-) True G21988
TU25518 lncRNA upstream 14873 22375781 ~ 22376012 (-) True G21991
TU25521 lncRNA upstream 23438 22384346 ~ 22384678 (-) True G21994
TU25523 lncRNA upstream 25773 22386681 ~ 22386933 (-) True G21996
TU25526 lncRNA upstream 32285 22393193 ~ 22394656 (-) False LOC110508988
LOC118966627 mRNA downstream 129045 22226205 ~ 22231598 (-) True LOC118966627
XM_021589510.2 mRNA downstream 157018 22111004 ~ 22203625 (-) True LOC110508721
LOC110532081 mRNA downstream 627357 21686077 ~ 21733286 (-) True LOC110532081
XM_021588545.2 mRNA downstream 756214 21587517 ~ 21604429 (-) False LOC110508066
XR_002471392.2 mRNA upstream 32070 22392978 ~ 22400311 (-) False LOC110508988
XR_002471395.2 mRNA upstream 32070 22392978 ~ 22400323 (-) False LOC110508988
XM_021590202.2 mRNA upstream 73767 22434675 ~ 22437595 (-) True LOC110509244
XM_021590377.2 mRNA upstream 102487 22463395 ~ 22487546 (-) False LOC110509312
XM_021590261.2 mRNA upstream 102487 22463395 ~ 22487547 (-) False LOC110509312
TU24399 other downstream 812870 21535933 ~ 21547773 (-) True LOC110507736
TU23814 other downstream 1271393 21085468 ~ 21089250 (-) False LOC118945319
TU25520 other upstream 20962 22381870 ~ 22382208 (-) True G21993
TU25921 other upstream 478937 22839845 ~ 22843305 (-) True G22350
TU26999 other upstream 1263118 23624026 ~ 23624349 (-) True G23394
TU27396 other upstream 1461792 23822700 ~ 23826491 (-) True LOC110511130
TU28304 other upstream 1861999 24222907 ~ 24226490 (-) True G24542

Expression Profile