RNA id: TU25513


Basic Information

Item Value
RNA id TU25513
length 390
lncRNA type intronic
GC content 0.47
exon number 1
gene id G21988
representative True

Chromosome Information

Item Value
chromosome id NC_048565.1
NCBI id CM023219.2
chromosome length 95772356
location 22366823 ~ 22367212 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

gttttgactgttagtcaggtgttgtattgttttgactgttactcaggtgttgtattgttttgactgttactcaggtgttgtattgttttgactgttactcaggtgttgtattgttttgactgttactcaggtgttgtattgttttgactgttagtcaggtgttgtattgttttgactgttactcaggtgttgtattgttttgactgttagtcaggtgttgtattgttttgactgttactcaggtgttgtattgttttgactgttactcaggtgttgtattgttttgactgttactcaggtgttgtattgttttgactgTTACTCAGGTGTAGCATTGTTTTGACTGTTACTCCTGGTTTGTTTTGACTAATCAGAGCTCTTACTCAAGGT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU25507 lncRNA downstream 5915 22360643 ~ 22360908 (-) True G21982
TU25489 lncRNA downstream 31729 22334837 ~ 22335094 (-) True G21964
TU25481 lncRNA downstream 46734 22319876 ~ 22320089 (-) True G21956
TU25479 lncRNA downstream 48876 22317482 ~ 22317947 (-) True G21954
TU25441 lncRNA downstream 98858 22267762 ~ 22267965 (-) True G21917
TU25518 lncRNA upstream 8569 22375781 ~ 22376012 (-) True G21991
TU25521 lncRNA upstream 17134 22384346 ~ 22384678 (-) True G21994
TU25523 lncRNA upstream 19469 22386681 ~ 22386933 (-) True G21996
TU25526 lncRNA upstream 25981 22393193 ~ 22394656 (-) False LOC110508988
TU25527 lncRNA upstream 28770 22395982 ~ 22400095 (-) True LOC110508988
LOC118966627 mRNA downstream 135225 22226205 ~ 22231598 (-) True LOC118966627
XM_021589510.2 mRNA downstream 163198 22111004 ~ 22203625 (-) True LOC110508721
LOC110532081 mRNA downstream 633537 21686077 ~ 21733286 (-) True LOC110532081
XM_021588545.2 mRNA downstream 762394 21587517 ~ 21604429 (-) False LOC110508066
XR_002471392.2 mRNA upstream 25766 22392978 ~ 22400311 (-) False LOC110508988
XR_002471395.2 mRNA upstream 25766 22392978 ~ 22400323 (-) False LOC110508988
XM_021590202.2 mRNA upstream 67463 22434675 ~ 22437595 (-) True LOC110509244
XM_021590377.2 mRNA upstream 96183 22463395 ~ 22487546 (-) False LOC110509312
XM_021590261.2 mRNA upstream 96183 22463395 ~ 22487547 (-) False LOC110509312
TU24399 other downstream 819050 21535933 ~ 21547773 (-) True LOC110507736
TU23814 other downstream 1277573 21085468 ~ 21089250 (-) False LOC118945319
TU25520 other upstream 14658 22381870 ~ 22382208 (-) True G21993
TU25921 other upstream 472633 22839845 ~ 22843305 (-) True G22350
TU26999 other upstream 1256814 23624026 ~ 23624349 (-) True G23394
TU27396 other upstream 1455488 23822700 ~ 23826491 (-) True LOC110511130
TU28304 other upstream 1855695 24222907 ~ 24226490 (-) True G24542

Expression Profile