RNA id: TU26735



Basic Information


Item Value
RNA id TU26735
length 404
RNA type TUCP
GC content 0.43
exon number 1
gene id G23135
representative True

Chromosome Information


Item Value
chromosome id NC_048565.1
NCBI id CM023219.2
chromosome length 95772356
location 23574592 ~ 23574995 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence


agcttcaatgccatacaactctccttccgtggcctccaattgctcttaaatacaagtaaaactaaatgcatgctcttcaaccgatcgctacctgcacctacccgcctgtccaacatcactactctggacggctctgacttagaatacgtggacaactacaaatacttaggtgtctggttagactgtaaactctccttccagacccatatcaaacatctccaatccaaagttaaatctagaaattggattcctatttcgcaacaaagcatccttcactcatgctgccaaacatacccttgtaaaactgaccatcctaccaatcctcgactttggcgatgtaatttacaaaatagcctccaataccctactcaacaaattggatgcagtctatcacagtgcaatcc

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU26730 lncRNA upstream 6805 23567525 ~ 23567787 (+) True G23130
TU26721 lncRNA upstream 18257 23556075 ~ 23556335 (+) True G23121
TU26717 lncRNA upstream 24310 23549995 ~ 23550282 (+) True G23117
TU26710 lncRNA upstream 33606 23540703 ~ 23540986 (+) True G23110
TU26706 lncRNA upstream 40657 23533679 ~ 23533935 (+) True G23106
TU26757 lncRNA downstream 26159 23601154 ~ 23601372 (+) True G23156
TU26769 lncRNA downstream 41588 23616583 ~ 23616812 (+) True G23168
TU26996 lncRNA downstream 46730 23621725 ~ 23622006 (+) True G23391
TU26998 lncRNA downstream 48834 23623829 ~ 23624293 (+) True G23393
TU27000 lncRNA downstream 49967 23624962 ~ 23625163 (+) True G23395
XM_036971767.1 mRNA upstream 705213 22713674 ~ 22869379 (+) False LOC110510174
XR_002471667.2 mRNA downstream 212498 23787493 ~ 23791559 (+) False LOC110511054
XM_021592266.2 mRNA downstream 230019 23805014 ~ 23822354 (+) True LOC110511247
XM_021592337.2 mRNA downstream 297919 23872914 ~ 23905175 (+) False LOC110511358
XM_021592384.2 mRNA downstream 297920 23872915 ~ 23905175 (+) False LOC110511358
XM_021592826.2 mRNA downstream 510674 24085669 ~ 24091336 (+) True LOC110512398
TU26709 other upstream 35729 23538396 ~ 23538863 (+) True G23109
TU24207 other upstream 2006404 21567545 ~ 21568188 (+) True G20773
TU22579 other upstream 3264694 20309425 ~ 20309898 (+) False G19400
TU22556 other upstream 3297697 20276590 ~ 20276895 (+) True G19380
TU22535 other upstream 3331717 20242645 ~ 20242875 (+) True G19359
TU27205 other downstream 298026 23873021 ~ 23899805 (+) False LOC110511358
TU27206 other downstream 298026 23873021 ~ 23899805 (+) True LOC110511358
TU27861 other downstream 929660 24504655 ~ 24506116 (+) True ccl4
TU27821 other downstream 975530 24550525 ~ 24552435 (+) True G24123
TU28011 other downstream 1264990 24839985 ~ 24840462 (+) True G24295

Expression Profile