RNA id: TCONS_00026515


Basic Information

Item Value
RNA id TCONS_00026515
length 1647
RNA type mRNA
GC content 0.43
exon number 8
gene id XLOC_013426
representative True

Chromosome Information

Item Value
chromosome id NC_007129.7
NCBI id CM002902.2
chromosome length 51023478
location 22739732 ~ 22753637 (-)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

TGACTAGGCCAGAAAGGGAGCAAGAGGAGACGGAGAGAGGAACAGCTTCAGCAGCGCACATCCTAAGAGAACATCAATTTGGAAATGGACTAAAATACCACAGGATTAAGGAGACtcgtctgttcaagtccaagtgcAGTCATGCAGGAGAACCCAGGCTCTATAGGTGTGGATGGGGGATATGCTAGCAATGTGCCCGCTTTCCTCACTAAACTCTGGACTCTGGTCGAGGACCCGGAGACTAATCATCTGATCTGCTGGAGTGCTacCGGGACCAGCTTTCATGTTTTCGACCAAGGCAGATTTGCCAAGGAAGTTCTGCCCAAATACTTCAAACACAACAACATGGCGAGTTTCGTACGCCAGCTCAACATGTACGGCTTCAGAAAAGTGGTGAATATTGAGCAGAGTGGGCTGGTGAAGCCAGAGCGAGACGACACTGAGTTCCAGCACCTCTATTTTCTCCAGGGCCACGAGCATCTGCTGGAGCACATTAAACGCAAAGTGTCAATAGTAAAAAGCGAGGAGACTAAAGTGCGACAGGAGGACTTGAGTAagctgttgtatgaggtccaggtGTTGCGGAGCCAACAGGAAAACATGGAGATGCAGATGCAGGATATGAAACAGCAGAATGATGTTCTGTGGAGGGAAGTGGTGTCACTGAGACAGAATCACACACAGCAGCAGAAAGTCATGAACAAGCTGATTCAGTTCCTGTTCAGCCAGATGCAATCCAACTCTCCAAGCACTGTGGGAATGAAGAGAAAGCTTCCTCTGATGCTGGATGACGGCTGCTCCACCCCTCCTGCCTCCAAATTCAGCCATAACCACTCCATGGAGTCTTTACAGGAATCATTCTATATCCAATCGCCATCCACAGAAAGTGCTTCCTGCTCGACTAGCAGCGTGATGACAGGAGGGCCCATCATCTCAGATGTCACTGAAATCCCACAGTCCAGCTCCATGGCTTTACAAATGCAGGCAGAGGAATCAAGGTGAGTGGACAGAACTTGATGGGTGAACAAATTGTCTATTTACCAAACACAATTTTCAACACAGCTGTCTTTTGATGAGAAAAAAGtccaaacttttaaaaactgacTTTAAAGCTGTACACTTTTTAAAACGCTACTATAATTTCGAAACaacttttattttcatattaaaatgaacACTCCAATTATTTTTGGTCACCCAGATTTGAAAAGTTTAGTTTTACCAATTATGAATCCATTCAGCTAATCTCCCGGTGGGGCGagaccacttttagcttagcttagcataaagcatcagattagaccattagcagtGGCCCCCTGTTAATCGCAGGAGTTtcattctaaaaataacccgcaatagGTGAAATCCACGAAgttgtcagctttattttttacaattattataaatattttagggCTGTAAAACTCCTTACTACACaattttctcagacaggcattaaaatttttacaattttctgtcttgtttcaaCACTCGCATAACTTGTACATTCCTTAAAcatgtccagaagtccaactttttgtgtgATAGTTTGGATTTTTCTCTGCATTTTGATTGACAATTGTCTACAGCCAAGCAGGACGCAGAACTCAAttcgctgtaaaaaaaaaaaaaagaaaaaagaaa

Function

GO: NA

KEGG: NA

ZFIN:

id description
ZDB-GENE-050306-18 Enables sequence-specific DNA binding activity. Involved in maintenance of lens transparency. Acts upstream of or within lens development in camera-type eye; positive regulation of deoxyribonuclease activity; and regulation of lens fiber cell differentiation. Predicted to be active in nucleus. Is expressed in eye; lens; and solid lens vesicle. Used to study cataract. Human ortholog(s) of this gene implicated in cataract and cataract 5 multiple types. Orthologous to human HSF4 (heat shock transcription factor 4).

Ensembl:

ensembl_id ENSDART00000009912

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00027296 lncRNA downstream 194192 22550595 ~ 22552314 (-) True XLOC_013420
TCONS_00026499 lncRNA downstream 799334 21944205 ~ 21947172 (-) True XLOC_013415
TCONS_00026498 lncRNA downstream 809931 21932253 ~ 21936575 (-) False XLOC_013415
TCONS_00026963 lncRNA downstream 1578388 21164826 ~ 21168118 (-) False XLOC_013403
TCONS_00027297 lncRNA upstream 433092 23186729 ~ 23188209 (-) False XLOC_013428
TCONS_00027298 lncRNA upstream 433092 23186729 ~ 23188268 (-) False XLOC_013428
TCONS_00027300 lncRNA upstream 433092 23186729 ~ 23188301 (-) False XLOC_013428
TCONS_00027299 lncRNA upstream 433092 23186729 ~ 23188301 (-) False XLOC_013428
TCONS_00026517 lncRNA upstream 433092 23186729 ~ 23189925 (-) False XLOC_013428
TCONS_00026512 mRNA downstream 11504 22721551 ~ 22735002 (-) True XLOC_013425
TCONS_00026511 mRNA downstream 28833 22716708 ~ 22717673 (-) True XLOC_013424
TCONS_00026509 mRNA downstream 32885 22712638 ~ 22713621 (-) False XLOC_013423
TCONS_00026510 mRNA downstream 33104 22712683 ~ 22713402 (-) True XLOC_013423
TCONS_00026508 mRNA downstream 44706 22701069 ~ 22701800 (-) True XLOC_013422
TCONS_00026521 mRNA upstream 1115013 23868650 ~ 23875370 (-) False XLOC_013432
TCONS_00026522 mRNA upstream 1116765 23870402 ~ 23875219 (-) False XLOC_013432
TCONS_00026524 mRNA upstream 1119818 23873455 ~ 23874929 (-) False XLOC_013432
TCONS_00026532 mRNA upstream 2179836 24933473 ~ 24989580 (-) False XLOC_013440
TCONS_00026533 mRNA upstream 2185055 24938692 ~ 24988661 (-) False XLOC_013440
TCONS_00026513 other downstream 3140 22739732 ~ 22743366 (-) False XLOC_013426
TCONS_00026504 other downstream 194250 22550595 ~ 22552256 (-) False XLOC_013420
TCONS_00026501 other downstream 662620 22083772 ~ 22083886 (-) True XLOC_013417
TCONS_00026485 other downstream 1026455 21712296 ~ 21720051 (-) True XLOC_013411
TCONS_00026472 other downstream 1721935 21020911 ~ 21024571 (-) True XLOC_013400
TCONS_00026516 other upstream 105842 22859479 ~ 22862467 (-) True XLOC_013427
TCONS_00026523 other upstream 1119707 23873344 ~ 24023013 (-) False XLOC_013432
TCONS_00026525 other upstream 1519791 24273428 ~ 24476114 (-) False XLOC_013435
TCONS_00026526 other upstream 1562544 24316181 ~ 24316299 (-) True XLOC_013436
TCONS_00026527 other upstream 1634382 24388019 ~ 24476883 (-) False XLOC_013435

Expression Profile

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