RNA id: TCONS_00026516


Basic Information

Item Value
RNA id TCONS_00026516
length 971
RNA type unprocessed_pseudogene
GC content 0.44
exon number 7
gene id XLOC_013427
representative True

Chromosome Information

Item Value
chromosome id NC_007129.7
NCBI id CM002902.2
chromosome length 51023478
location 22859479 ~ 22862467 (-)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

ATGGAAAGCAGTCCACATGTATGCTTGACTGTAAGATGTTTGGAAGAAAATATGTCTGCTGGCCTGCCTGAGGtgatttcACCCACAAGATCATCAACAGCCAGCACATGTACTGATACAGTTTCACTCTCTTCTACGGATCATGATGATCCAGAGCAAACAATGCAGAATCAAATGACAAGGGCCAGCAGGTGCTTGATGGTAGATGCTGAAAGGGCAAAACGGATTGTCCAAGATGCTTTGGAAAAGCAATCTGGTGGTGATGAAGTGCTTGACGAATACAAGGCCACAAAAACTTTAAAGCACAGCACTAGACGGCAACTGGTTAATATTGTTGTCAGTCACATGACAGAGATTCATGGGAGAATTCCCACCCGCAAGCAACGGGAGACTTATGCCTTGGGCATTATTTCTCTCTTTCCCAGCCTGAGAGACCCGTTTTCAGCAAAAGGCTATATAAATCAAGACTTTGGTTTGCTGTTCAATGCTGAAACATCCAACAAGTTGCTTGAGAGATGGGAGACCCCTTTAAGCACAAGATCATCAATGAGGCCAAATCTCTAACTTCAACTGCAGAAATTCATGGTCTTATTAATTCAGCAGAGGGACAAGGATCTGAAAATGAGGCTGTTGAAAGACTTGTGCATTTCCATAAGTCTTGCACCAGTATTGAAGGCCATCTCAGTAAGAGGGAAGGCCACCAGCCATATCTACTTGGAACAGGAAGGATCAAAGGGAGGATCGACAATTTCTATGTGGTTATGGACAAACATCTCATCCCTTGTGCAGGAACCAGCTCCTTGAGTGCCGTTGATGAACTCTTTAAAATCCACTACGTGTTCAACTTGACGTATGAGGAAGCACTTGTCAACATCTTTACCTTTTTGCAGACTACAGTCTACAACATCGATGTTGGACTTACCAGCGAGTCACCCAGGGTAAAGGAACTGCGTGCAAAGCttttaaactaa

Function

GO: NA

KEGG: NA

Ensembl:

ensembl_id ENSDART00000140627

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00027296 lncRNA downstream 307165 22550595 ~ 22552314 (-) True XLOC_013420
TCONS_00026499 lncRNA downstream 912307 21944205 ~ 21947172 (-) True XLOC_013415
TCONS_00026498 lncRNA downstream 922904 21932253 ~ 21936575 (-) False XLOC_013415
TCONS_00026963 lncRNA downstream 1691361 21164826 ~ 21168118 (-) False XLOC_013403
TCONS_00027297 lncRNA upstream 324262 23186729 ~ 23188209 (-) False XLOC_013428
TCONS_00027298 lncRNA upstream 324262 23186729 ~ 23188268 (-) False XLOC_013428
TCONS_00027300 lncRNA upstream 324262 23186729 ~ 23188301 (-) False XLOC_013428
TCONS_00027299 lncRNA upstream 324262 23186729 ~ 23188301 (-) False XLOC_013428
TCONS_00026517 lncRNA upstream 324262 23186729 ~ 23189925 (-) False XLOC_013428
TCONS_00026514 mRNA downstream 105842 22739732 ~ 22753637 (-) False XLOC_013426
TCONS_00026515 mRNA downstream 105842 22746506 ~ 22753637 (-) True XLOC_013426
TCONS_00026512 mRNA downstream 124477 22721551 ~ 22735002 (-) True XLOC_013425
TCONS_00026511 mRNA downstream 141806 22716708 ~ 22717673 (-) True XLOC_013424
TCONS_00026509 mRNA downstream 145858 22712638 ~ 22713621 (-) False XLOC_013423
TCONS_00026521 mRNA upstream 1006183 23868650 ~ 23875370 (-) False XLOC_013432
TCONS_00026522 mRNA upstream 1007935 23870402 ~ 23875219 (-) False XLOC_013432
TCONS_00026524 mRNA upstream 1010988 23873455 ~ 23874929 (-) False XLOC_013432
TCONS_00026532 mRNA upstream 2071006 24933473 ~ 24989580 (-) False XLOC_013440
TCONS_00026533 mRNA upstream 2076225 24938692 ~ 24988661 (-) False XLOC_013440
TCONS_00026513 other downstream 116113 22739732 ~ 22743366 (-) False XLOC_013426
TCONS_00026504 other downstream 307223 22550595 ~ 22552256 (-) False XLOC_013420
TCONS_00026501 other downstream 775593 22083772 ~ 22083886 (-) True XLOC_013417
TCONS_00026485 other downstream 1139428 21712296 ~ 21720051 (-) True XLOC_013411
TCONS_00026472 other downstream 1834908 21020911 ~ 21024571 (-) True XLOC_013400
TCONS_00026523 other upstream 1010877 23873344 ~ 24023013 (-) False XLOC_013432
TCONS_00026525 other upstream 1410961 24273428 ~ 24476114 (-) False XLOC_013435
TCONS_00026526 other upstream 1453714 24316181 ~ 24316299 (-) True XLOC_013436
TCONS_00026527 other upstream 1525552 24388019 ~ 24476883 (-) False XLOC_013435
TCONS_00026529 other upstream 1697720 24560187 ~ 24560397 (-) True XLOC_013437