RNA id: TU27476


Basic Information

Item Value
RNA id TU27476
length 3202
lncRNA type antisense_over
GC content 0.40
exon number 2
gene id G23830
representative True

Chromosome Information

Item Value
chromosome id NC_048565.1
NCBI id CM023219.2
chromosome length 95772356
location 23901670 ~ 23905158 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

TCATTATTTTCTCCACATAACTCAAAAACAAACAGACCCCCAAAAAGTTAATaaataaaagaggagaggagagagaaaaagaactgGGCATGCTTGGGCATGCGATGGGCTCTCAAGGTGATGGGTACTTCCAGTCGGAATGGTAGAAAAACCACAGGAACAGGGACATCACCTCTGCACCTCTCAGCATCAAGACCCGCTGGACCAATATTCATAGTTATTCTTTGAATCAGTGAACCATTTCCCATAATATCCCTTAACCATCTTACAGTATCAGTCCAGTTTCCAACAGTACCTCAGTAAGTCAAGACTGGGGGAgcaaaccacaggaggttggtggcaccttaattggggaggatgggcttgtggtaatggctggagcggaattagtggaatggcataaaatacatcaaacacatggtttccatgtgtttgatgcaacTCCATTTACTCCGATACAGCCATcaatatgagccgtcctcccctcagcagcctccactggcgcAAACGTTCTTGAAAAATATAACTCCAAGCATTTGGCCCCAGCTTTCATTCCTTCACATCGGCAGCTCTGTTTGACTTTGCTGGATAGAGAAACGGAGAGGTatgggaggaagagaagagagcacACATACTGTAGATTGTGAATGATTACTGACTGGAGGACCAAGACAATCAGGAGGGAGTACTAGCCCATTACAGACATGCTATAAATGTCTCAGAGTGTTTGAGTTAGTTAGCCAGCTATAAAAAATACACAAAACATTTCTCTCTTagtttgtctgtttttttttctctgttgTTTAGTTCCGTCTAAGATGTGGGCTTTGTCATGGAGAAGCAGTGGGATGCAGTAGACTGTCTGATTCCTTTACTGTACCGTACTATAGCTCCAGCCCAGGCTATCCTATGGAAGATTCTGCTTCTCAGAACAGTACTGGACAACACCTGGAAAGGTTCTGCTTGCTCACAACTAAGAGGAAATTGGCAAAGCCAGTAAAAGACAACCTTTCCTCATTGGGatgacattttaaaatgtttttattttttttatatttttttttcaaaaaaaatgtatacaaatctAAAACATACTTGACCATGCAttttagaatatattttttttctttataaACTTTATAAAACAAGGCAGTTGGCGTTTTTTCAGACGTCTTGCAAATAGCTAAAAATGTTGATGATTTTTTTCTGTCTTGGGAAATCGTTGTTTTGAAAGCAGCAGTTTGAAACGTAACAGTCTCTGAACTTGTACTTGGGCACACCCGTCTCTTACTGTACGGCGAGCCAGTGGCTCCAGACCAGGTGTGTGGGGTGAGGTTTGGGAAGAAACCTTtagtcattatactgtaatgagaaagagagagagagagagagagagagagagagactctgttGGGGCCAAAGGGGCAGTTAGATGACAACTGACAGAATGTCATGCCCTACAGTCCTCATATGAAGTTCAACCTGTACATTAAAGACCAGAGAGATACTGATGAAGTTGGTTGGAATGTTAATATTTTATACAAATCTAGCGTATAATAACTCCACTGGACAGACGTGCATGAGCATTGTACCTGTTGTGTACATGGaattgtacagtgtgtgtgtgtttgagagttcTTTCCTTTAGATCATGATTTCCTTTTGTTGTAGACTACAGAGAGAATCTTTAACATTAGAGACTTTTGTTGTAGACTACAAAGAGAATCTTTTACATTAGAGACTTTTGTTGTAGACTACAGAGAGAATCTTTAACATTAGAGACTTTTGTTGTAGACTACAGAGAGAATCTTTTACATCAGAGACTTTTGTTGTCGACTATAGAGAGAATCTTTTACATTAGAGACCTGGATGAAGTCCTTTCAGACAGAACTATTCCTACTCCGGTTGCGGACGGATTAGAGTTGATAAAGAGTAGATCCTCGTGCATGTTTCAATCTTGGTAACCCACGTTGCTAAATTTACAAACGGTTTGCTAACATAGATAGGTATAGTGTTATAGTTGTTAGAGGCAAATTTGTATTGGTCATCCTGGTTTTTCAGATTGTAAACATGTCCTGTTGCTGACCAGATTCTGTAGTTGCAAAAGTTTTTTTGCAGCCCTATTTTTATTTAATCATATTTTCATGAAAGAAGGAAACAAAATGAAGTCTTGGTGAAAATGGTTGGTTGTTAGGATTTGGGGAGCATGGTGGGGTATAAAATGAAAGGAGACTTACATGAAACAAGGAAAAGAGGGTAACAAGATATGGAGTGATGTCATGAGTGGACTACCGGGAAGGGGAAGGATGGGTGGTGAGAGGCTGAACTTATAATCGTGAAGGGGAACAACGTGCCAGAAGGGTGATATGTGCAGGGGTAGAGGATGGGGAGGGTTCGGAGGGCACTGGgtaggacaggggacagggggcCGTTTCCCATCCCTTTGAACCTTGTATTACTGGGTGGACAACACCTGTGTTCAAATACtacttgaaatctttcaaatactttcagcatttgctttagcctgcctcaACTGTCAGGTAGGCATtgttttgcacttttgggacttttCTATTGTTTCCACTGCAACAggtaagctcaatcaagcacagatacagtatttaaatatattattaaatagtatttgaacccaggtcaggTGGACACAGTCAGAACCAGAGTAGATACATTATCTTCTGCCTCATTTGACCCACTACACCATCATACAGGCAGTGCCACCACTCATCTGAGTCTACCTCCAGAAACAAACTCAATCAAAAGAACATCAGCAATATCAACAGAGAGAAAAGGCAATTAAGGaatacaaaataatatatattaacATGTCATATGTGATAAATAAAATTAATCATTTTAATTATACGTTTTTAAACGATGATTTAAGAAGAAGAACAGGTAATTTCAGGGAGAGAAATCCAAAATGTTTTGCAGATGTTTTGCAGATAACTGCTTCTCTGAAATCTGGGCATTGGGAACCATCTGTATCCCCATATTGTTTATCCTCTTACTATATTCTTTACAGAAGTGTCAAATGGTCAAGGTCTGGTTACTGATAGTCATGATAGTACTCATAATAATGTATAATCATAAAAGGAATCAATAGGCAATACATGTTTAAATAAAAAAGTGGATAAACAAAATTGCGACTCCAATGTTGAGCAAAATCACCATGACGACC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU27448 lncRNA downstream 47982 23853285 ~ 23853688 (-) True G23808
TU27445 lncRNA downstream 55059 23846361 ~ 23846611 (-) True G23805
TU27444 lncRNA downstream 55490 23845959 ~ 23846180 (-) True G23804
TU27441 lncRNA downstream 58870 23842233 ~ 23842800 (-) True G23801
TU27439 lncRNA downstream 62139 23839234 ~ 23839531 (-) True G23799
TU27477 lncRNA upstream 1739 23906897 ~ 23907116 (-) True G23831
TU27478 lncRNA upstream 3099 23908257 ~ 23908561 (-) True G23832
TU27479 lncRNA upstream 3754 23908912 ~ 23909237 (-) True G23833
TU27484 lncRNA upstream 7724 23912882 ~ 23913107 (-) True G23838
TU27485 lncRNA upstream 9960 23915118 ~ 23915358 (-) True G23839
XM_036972417.1 mRNA downstream 40641 23821656 ~ 23861029 (-) False LOC110511130
XM_036972413.1 mRNA downstream 40642 23821656 ~ 23861028 (-) False LOC110511130
XM_021592107.2 mRNA downstream 126805 23769293 ~ 23774865 (-) True LOC110510928
XM_021591923.2 mRNA downstream 281895 23321071 ~ 23619775 (-) False LOC110510575
XM_021592530.2 mRNA upstream 36737 23941895 ~ 23945943 (-) True LOC110511707
XM_021592581.2 mRNA upstream 76057 23981215 ~ 24015777 (-) True LOC110511826
XM_021592720.2 mRNA upstream 129067 24034225 ~ 24047501 (-) False LOC110512077
XM_036972886.1 mRNA upstream 129067 24034225 ~ 24049430 (-) False LOC110512077
XM_021592683.2 mRNA upstream 129067 24034225 ~ 24049433 (-) True LOC110512077
TU27396 other downstream 75179 23822700 ~ 23826491 (-) True LOC110511130
TU26999 other downstream 277321 23624026 ~ 23624349 (-) True G23394
TU25921 other downstream 1058365 22839845 ~ 22843305 (-) True G22350
TU25520 other downstream 1519462 22381870 ~ 22382208 (-) True G21993
TU24399 other downstream 2353897 21535933 ~ 21547773 (-) True LOC110507736
TU28304 other upstream 317749 24222907 ~ 24226490 (-) True G24542
TU28501 other upstream 647433 24552591 ~ 24553562 (-) True LOC110514811
TU28721 other upstream 958929 24864087 ~ 24864834 (-) True znf276
TU28795 other upstream 1023190 24928348 ~ 24938701 (-) False LOC118956210
TU28762 other upstream 1039750 24944908 ~ 24951387 (-) False LOC110518671

Expression Profile