RNA id: TCONS_00027300


Basic Information

Item Value
RNA id TCONS_00027300
length 952
lncRNA type inter_gene
GC content 0.44
exon number 3
gene id XLOC_013428
representative False

Chromosome Information

Item Value
chromosome id NC_007129.7
NCBI id CM002902.2
chromosome length 51023478
location 23186729 ~ 23195554 (-)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

GCAAACACCCATTGGCACCAGAACCCTAACAAACCGCACTGAACACCAGCCACCTGTGGTCTACATATTAGCCGGAAAGTAACACATGTAGCTTTTTTCTTCCATCCAACTGATTGTGTGTCTCTCACCTGTCTGTAGAGATGATCGATCCCCTTCACAGAACCTGCTGCTCAGGCCTTCCCCAGCCAGACCAGCTGGCTTTGGACGGCTTTCTTCTTGCCCCTGTGAGGCCTGACTTCACACTCTCGTCCCTGGGTCTTTCTGCCGGAAGGGAGCTGGGCGACAGAAGTTTGAAGGGTAGGATCCCAGATGGACGCTGACACGCTGGGCATGCGTGTATGTGACAGGGCTTGGCTCAGGGGAGTGGTGGACCAGCCGCAGCTGTCACTCACAAATACTGAGTGTGTTAGATGTGTTTTGTCTTATTAGTATTGATAAAAGTGCAAAATTGTGCTGATCGGAGAACAACAATGGCTGACTATTCACAAGAGAAAGGGACGATATAAGGAATGATGCCCTGTTGGTTTGCTTTCTCATTGTAAAACTTTGCCAGCGATGGCACCAGTATTTTCAAGTGTAATTTTAATTGCCAGTAGAAGTCATGTTACATTAGCCACCAACATTTGAGGATGATTTCAAATCATACTGTAAGTTGCCATGAAGCTTCGCATTGAACATTTTCTTGGATAACCAAACGCAATCTTAGAATCATAACTGTCAGTTTGAAAACCTTGCCCCACTATACTTTTGATACCTTTTGGACATAGAAGGACCACTACACCTCTACTCAAATATGCCATGGAGGGGTATgcacatttttagaaataatgatgCATAATGATTGTTTGGAAACATGGGTTTACAGATCCCAATGTAAATGGGAGGATTTCCATGTTATCACAATGGCATTGATAATGTACTGtagggaaaataaataattaatgacttAGTA

Function

GO:

id name namespace
GO:0050877 nervous system process biological_process
GO:0043010 camera-type eye development biological_process
GO:0050953 sensory perception of light stimulus biological_process
GO:0002088 lens development in camera-type eye biological_process
GO:0007600 sensory perception biological_process
GO:0007601 visual perception biological_process
GO:0017156 calcium-ion regulated exocytosis biological_process
GO:0017158 regulation of calcium ion-dependent exocytosis biological_process
GO:0048880 sensory system development biological_process
GO:0007626 locomotory behavior biological_process
GO:0003008 system process biological_process
GO:1903305 regulation of regulated secretory pathway biological_process
GO:0001654 eye development biological_process
GO:0007423 sensory organ development biological_process
GO:0045055 regulated exocytosis biological_process
GO:0150063 visual system development biological_process
GO:0042995 cell projection cellular_component
GO:0043005 neuron projection cellular_component
GO:0044456 obsolete synapse part cellular_component
GO:0120025 plasma membrane bounded cell projection cellular_component
GO:0045202 synapse cellular_component
GO:0097458 obsolete neuron part cellular_component
GO:0005198 structural molecule activity molecular_function
GO:0005212 structural constituent of eye lens molecular_function

KEGG:

id description
ko03230 Viral genome structure
ko05164 Influenza A
ko03200 Viral proteins

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00027296 lncRNA downstream 634415 22550595 ~ 22552314 (-) True XLOC_013420
TCONS_00026499 lncRNA downstream 1239557 21944205 ~ 21947172 (-) True XLOC_013415
TCONS_00026498 lncRNA downstream 1250154 21932253 ~ 21936575 (-) False XLOC_013415
TCONS_00026963 lncRNA downstream 2018611 21164826 ~ 21168118 (-) False XLOC_013403
TCONS_00027305 lncRNA upstream 212829 23401130 ~ 23403453 (-) False XLOC_013429
TCONS_00027304 lncRNA upstream 212829 23401130 ~ 23403453 (-) True XLOC_013429
TCONS_00027306 lncRNA upstream 251161 23439462 ~ 23598642 (-) False XLOC_013430
TCONS_00027307 lncRNA upstream 262652 23450953 ~ 23598642 (-) False XLOC_013430
TCONS_00026964 lncRNA upstream 262652 23450953 ~ 23598675 (-) False XLOC_013430
TCONS_00026514 mRNA downstream 433092 22739732 ~ 22753637 (-) False XLOC_013426
TCONS_00026515 mRNA downstream 433092 22746506 ~ 22753637 (-) True XLOC_013426
TCONS_00026512 mRNA downstream 451727 22721551 ~ 22735002 (-) True XLOC_013425
TCONS_00026511 mRNA downstream 469056 22716708 ~ 22717673 (-) True XLOC_013424
TCONS_00026510 mRNA downstream 473327 22712683 ~ 22713402 (-) True XLOC_013423
TCONS_00026521 mRNA upstream 680349 23868650 ~ 23875370 (-) False XLOC_013432
TCONS_00026522 mRNA upstream 682101 23870402 ~ 23875219 (-) False XLOC_013432
TCONS_00026524 mRNA upstream 685154 23873455 ~ 23874929 (-) False XLOC_013432
TCONS_00026532 mRNA upstream 1745172 24933473 ~ 24989580 (-) False XLOC_013440
TCONS_00026533 mRNA upstream 1750391 24938692 ~ 24988661 (-) False XLOC_013440
TCONS_00026516 other downstream 324262 22859479 ~ 22862467 (-) True XLOC_013427
TCONS_00026513 other downstream 443363 22739732 ~ 22743366 (-) False XLOC_013426
TCONS_00026504 other downstream 634473 22550595 ~ 22552256 (-) False XLOC_013420
TCONS_00026501 other downstream 1102843 22083772 ~ 22083886 (-) True XLOC_013417
TCONS_00026485 other downstream 1466678 21712296 ~ 21720051 (-) True XLOC_013411
TCONS_00026523 other upstream 685043 23873344 ~ 24023013 (-) False XLOC_013432
TCONS_00026525 other upstream 1085127 24273428 ~ 24476114 (-) False XLOC_013435
TCONS_00026526 other upstream 1127880 24316181 ~ 24316299 (-) True XLOC_013436
TCONS_00026527 other upstream 1199718 24388019 ~ 24476883 (-) False XLOC_013435
TCONS_00026529 other upstream 1371886 24560187 ~ 24560397 (-) True XLOC_013437

Expression Profile

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