RNA id: TU28242


Basic Information

Item Value
RNA id TU28242
length 1375
lncRNA type antisense_over
GC content 0.41
exon number 2
gene id G24504
representative True

Chromosome Information

Item Value
chromosome id NC_048565.1
NCBI id CM023219.2
chromosome length 95772356
location 24111044 ~ 24112648 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

accaatcagtgaggatagagcagcttgctatggcACGGGCAAGCAATAGTTGTCTGACATCTATCTACTGCATGGGTAAACAAGTGTAGGGCGCGAGATGCGATTGAAATTTTCCAGGTGGGGAAAGATCGAGAGAGGTTGGAGGAGGCGGCATGAAGTGCTGGGCATCTTgtgatgacatgcattatctgaactaggcccacagaattatacctacggaggagcggcttatatgaaggaactttgaatgtctttgaacttgaAAAGAGTTGGCTTAAAGTTGGACGAGAGCTAACTAACAaacttgtgtgtgcagagcggcatcagaattaaaataaaaaacacatcttacctttttgtagttaataaatccaatgagAAACGTGATAAGGATACTATAGTTAACCAGCATTGATAAAGTTAATCCATTCTACTCGAATAAAAAAAATCTCTACATTTCTGAATCACGCATGTaacgtcagtaggctacagtgcttcggagggggagggacaggtaaactacacacacacaaagattttctgagtgacagagtgagggctttgcataggcgcATTGTTGCGTTTGTGGGACTGTAAAAAAAATACCTGGAATGTAAAATAACATTATTACCCGGTTCCCgtgcttttaaaataacggttctgttccagaacagtatagatcacttcCGTTCCCGGTTCTGATCATCATTTTTGTTTTAGTGATATTtctggttctgttccctgaaccggttccattTCCTGATATGCATACACTGCTACTACAGTGATTAGGTTGTGGAAAAGTAACAATACACAATCATTTCAACCCTCCACCCACCAAACAAAACATTTTATATCAGAGTTGATACAGCGTCATTGATTCCAAAATAAAAAAAGCAAGAGGCCATCAGTAGACTAGCAGCTGCTGAAACTTAGCAATCATAAAAGTCTTGAGTATCCTGGGTAAGAGAATGGAACATTAATGCATGCAGGATCTCTGTAGATGCATTCTATAGTGACAACCACTGTTGGCAAGAGAATAGTTCTGGGTCATGGTGCAACACACCGGTCAAGCAGGTCATCACAAGGGGAACTGGTCCACATCGCCTTTTTTTCTTTTTAATCTACAagGTAATTTATGTACAAATGCAAAGCTTTTCATAGACAGAAATGTAGGCGAATGTGGTGATTTACATTAATTTTTTTCCCCACTTGCAAGGAAGTTGATTCAAGAAGGTAAGGATAGATAAGAGTAAATGACCTGGGCTTGAACATCCACCCTAGTGTTTGAAGTGAAAGACATATCCTTGTTGGTGTCTCCTCTGTCCTTCAGACAGTAGCCCTAAAGCAGTGACACTTGGCAGTGActtctatt

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU28255 lncRNA downstream 6594 24103548 ~ 24104450 (-) True G24515
TU28254 lncRNA downstream 14152 24096576 ~ 24096892 (-) True G24514
TU28250 lncRNA downstream 18545 24092044 ~ 24092499 (-) True LOC118948024
TU27590 lncRNA downstream 28668 24082092 ~ 24082376 (-) True G23940
TU27582 lncRNA downstream 35359 24075401 ~ 24075685 (-) True G23932
TU28246 lncRNA upstream 4151 24116799 ~ 24117790 (-) True G24507
TU28316 lncRNA upstream 57685 24170333 ~ 24178502 (-) True G24550
TU28300 lncRNA upstream 115391 24228039 ~ 24231869 (-) False G24541
TU28293 lncRNA upstream 115465 24228113 ~ 24231869 (-) False G24541
TU28299 lncRNA upstream 115465 24228113 ~ 24231869 (-) False G24541
XM_036973051.1 mRNA downstream 8120 24091604 ~ 24102924 (-) False LOC118948024
XM_021592634.2 mRNA downstream 38634 24050309 ~ 24072410 (-) True uba2
XM_021592683.2 mRNA downstream 61611 24034225 ~ 24049433 (-) True LOC110512077
XM_036972886.1 mRNA downstream 61614 24034225 ~ 24049430 (-) False LOC110512077
XM_021592720.2 mRNA downstream 63543 24034225 ~ 24047501 (-) False LOC110512077
XM_021593038.2 mRNA upstream 6576 24119224 ~ 24126628 (-) True ccdc113
XM_021593323.2 mRNA upstream 120568 24233216 ~ 24288176 (-) True LOC110513500
XM_021593400.2 mRNA upstream 185050 24297698 ~ 24343156 (-) True LOC110513605
XM_021593578.2 mRNA upstream 295397 24408045 ~ 24410610 (-) True LOC110513914
XM_021594017.2 mRNA upstream 439744 24552392 ~ 24554074 (-) False LOC110514811
TU27396 other downstream 284553 23822700 ~ 23826491 (-) True LOC110511130
TU26999 other downstream 486695 23624026 ~ 23624349 (-) True G23394
TU25921 other downstream 1267739 22839845 ~ 22843305 (-) True G22350
TU25520 other downstream 1728836 22381870 ~ 22382208 (-) True G21993
TU24399 other downstream 2563271 21535933 ~ 21547773 (-) True LOC110507736
TU28304 other upstream 110259 24222907 ~ 24226490 (-) True G24542
TU28501 other upstream 439943 24552591 ~ 24553562 (-) True LOC110514811
TU28721 other upstream 751439 24864087 ~ 24864834 (-) True znf276
TU28795 other upstream 815700 24928348 ~ 24938701 (-) False LOC118956210
TU28762 other upstream 832260 24944908 ~ 24951387 (-) False LOC110518671

Expression Profile