RNA id: TU28304


Basic Information

Item Value
RNA id TU28304
length 3144
RNA type TUCP
GC content 0.30
exon number 2
gene id G24542
representative True

Chromosome Information

Item Value
chromosome id NC_048565.1
NCBI id CM023219.2
chromosome length 95772356
location 24222907 ~ 24226490 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

ttgtgtaaaacctagtttaaatgtatttggctaaggtgtatgtaaacttccgacttcaactgtatgtgctgtagAGATTATCAACCAATAATATTCCTCTGAAGCAGTCATGGTTTTCTTTTTTAGTCAGTCAAATGATAAAAATGCATCAAAAGGAATTTCAGTACCTTTTTGGATGATTAGCTAtgtttagtttatttagtcaaaCACAACCATCAACCCAGCTGTTTATATTCATCCAACACTGCATCTGTTCTAAAATCTTCCTTTTTACAAGATACAGATAATGCACATGTAAAAACATAACATATTCCAACATCAAGCTCATCATCAATCCATATGTTTAAATATAGTCATCTTCCAATAAAAGTACACAGATATTATGTGATATCAAGTGCTTTCAGTGGTGTTGCAATGTGCCTGAAGCGTATAACATGACACTCATAATGTGAAAGTACATGCTTAGAAAAAagagttccaaaagggttcttcgggaAGTCCCCTTAggagaatcctttttggttccaggtagaacccaaaaggcttctacctggaaccaaaaatagttattcaaagggttctcctatgggggcaGGCGAAGATCCCTTTTAGGCTAGATAGCACCTTTCTTCCTAAAAGTGTACATGGAACACACTGTCGGGAAAAATTTAcaaaattatatgcatatttGCACTTGTGTGATTATACAGCAAATGAAATACTTGCATAGTATGtttcacacacacaataaagtccAAAGCTACCCAATATTTCAAGAAGTCTCAAACATACTTATGCTGAAGCTGCATTTACACAACGTACAAAAGCTCTTAGCTCTTGCTCTTTGGTTTTCCTTCATCAGTGCCTCGCCTCTCACTCTAGTACAGGGATGTCAAATATATGGCCCACGGGCTGGATCCGGCCAGCGAAAGGTTCCTATCCGGCCTGCGGGTGGTTTAAGTGTATGtgtatatagagatatagagatatagagatatagagatatagagatatagagatatagagagagatatagagagagagatagatagatagatagatagatagagagagagagagagagagagagagagagagagagagagagagagagagagagatagatagatagatagatagatagatagatagatagatagatagatagatagatagataggttcggcgcatgtgacacatgtttttcctcatcaatctacagtaataataccccataatgacaaagcaaaaacaggtttttagaaatgttatgagactcgaaattgagctcaggtacatcctgtttccattgatcatccatctGTGAGAggtttctagaacttgattggtgtcagacgctccccatccaacttaacagagcttgagaggatctgcagagtggaatgggagaaactccccaaataaaggtgtgccaagcttgtagcatcatacctaagaagatttgagactgtaatcgctgccaaagatgcttcaacaacgtactgagtaaagagtctggatacttatgtaaatgtgatattacagttttacatttttaataaatgtgctaaaatttctaaaaacctgtttttgctttgtcattatggggtaatgtgtgtaggttgatgagtaaaaaaatatgtaatccattttataataagactgtaacgtaacaaaagggggtctgaatacgttcgaatgcactgtatacatacagtggggcaaaaaagtatttagtcagccaccaattgtgcaagttctcccacttaatttttttttttcatcataggtacacttcaactatgacagacaaaatgagggaaaaaaatccagaaaatcacattgtaggattttttatgaatttatttgcaaattatggtggaaaataagtatttggtcacctacaaacaagcaagatttctggctctcacagacctgtaacttcttctttaagaggctcctctgtcctccactcgttatctgtattaatggcacctgtttgaacttgttatcagtataaaagacatctgtccacaacctcaaaaggtcacattccaaactccactatggccaagaccaaagagctgtcaaaggacaccagaaacaaaattgtagacctgcaacaggctgggaagactgaatctgcaataggtaagcagcttggtttgaagaaatcaactgtgggagcaattattaggaaatggaagacatacaagaccactgataatctccctcgatctggggctccacgcaagatctcaccccgtggggtcaaaatgatcacaagtgcggtgagcaaaaatcccagaaccacacggggggacctactgaatgacctgcagagagctgggaccaaagtaacaaagcctaccataagtaacacactacgccgccagggactcaaatcctgcagtgccagacgtgtccccctgcttaagccagtacatgtccaggcccgtctgaagtttgctagagagcatttggatgatccagaagaagattgagagaatgtcatatggtcagatgaaaccaaaatataactttttggtaaaaattcaactcgtcgtgttggaggacaaagaatgctgagttgcatccaaagaacaccatacctactgtgaagcatggggatggaaacatcatgctttggggctgtttttctgcaaagggaccaggacgactgatccgtgtaaaggaaagaatgaatggggccatgtatcgtgagattttgagtgaaaacctcgttccatcagcaagggcattgaagatgaaacgtggctgggtctttcagcatgacaatgatcccaaacacaccgcccgggcaacgaaggagtggcttcgtaagaagcatttcaaggtcctggagtggcctagccagtctccagatctcaaccccatagaaaatctttggagggagttggagggagttgaaagtctgtgttgcccagcaacagccccaaaacatcactgctctagaggagatctgcatggaggaatgggacaaaataccagcaacagtgtgtgaaaaccttgtgaagacttacagaaaatgtttgacctctgtcattgccaacaaagggtatataacaaagtattgagataaacttttgttattgaccaagtacttattttccaccatcattt

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU28316 lncRNA downstream 44405 24170333 ~ 24178502 (-) True G24550
TU28246 lncRNA downstream 105117 24116799 ~ 24117790 (-) True G24507
TU28242 lncRNA downstream 110259 24111044 ~ 24112648 (-) True G24504
TU28255 lncRNA downstream 118457 24103548 ~ 24104450 (-) True G24515
TU28254 lncRNA downstream 126015 24096576 ~ 24096892 (-) True G24514
TU28300 lncRNA upstream 1549 24228039 ~ 24231869 (-) False G24541
TU28293 lncRNA upstream 1623 24228113 ~ 24231869 (-) False G24541
TU28299 lncRNA upstream 1623 24228113 ~ 24231869 (-) False G24541
TU28301 lncRNA upstream 1623 24228113 ~ 24231869 (-) True G24541
TU28395 lncRNA upstream 82109 24308599 ~ 24308889 (-) True G24621
XM_021593038.2 mRNA downstream 96279 24119224 ~ 24126628 (-) True ccdc113
XM_036973051.1 mRNA downstream 119983 24091604 ~ 24102924 (-) False LOC118948024
XM_021592634.2 mRNA downstream 150497 24050309 ~ 24072410 (-) True uba2
XM_021592683.2 mRNA downstream 173474 24034225 ~ 24049433 (-) True LOC110512077
XM_036972886.1 mRNA downstream 173477 24034225 ~ 24049430 (-) False LOC110512077
XM_021593323.2 mRNA upstream 6726 24233216 ~ 24288176 (-) True LOC110513500
XM_021593400.2 mRNA upstream 71208 24297698 ~ 24343156 (-) True LOC110513605
XM_021593578.2 mRNA upstream 181555 24408045 ~ 24410610 (-) True LOC110513914
XM_021594017.2 mRNA upstream 325902 24552392 ~ 24554074 (-) False LOC110514811
NM_001165110.1 mRNA upstream 369595 24596085 ~ 24602378 (-) False ciapin1
TU27396 other downstream 396416 23822700 ~ 23826491 (-) True LOC110511130
TU26999 other downstream 598558 23624026 ~ 23624349 (-) True G23394
TU25921 other downstream 1379602 22839845 ~ 22843305 (-) True G22350
TU25520 other downstream 1840699 22381870 ~ 22382208 (-) True G21993
TU24399 other downstream 2675134 21535933 ~ 21547773 (-) True LOC110507736
TU28501 other upstream 326101 24552591 ~ 24553562 (-) True LOC110514811
TU28721 other upstream 637597 24864087 ~ 24864834 (-) True znf276
TU28795 other upstream 701858 24928348 ~ 24938701 (-) False LOC118956210
TU28762 other upstream 718418 24944908 ~ 24951387 (-) False LOC110518671
TU28960 other upstream 1054102 25280592 ~ 25281030 (-) True G25115

Expression Profile