RNA id: TU28301


Basic Information

Item Value
RNA id TU28301
length 3526
lncRNA type inter_gene
GC content 0.46
exon number 2
gene id G24541
representative True

Chromosome Information

Item Value
chromosome id NC_048565.1
NCBI id CM023219.2
chromosome length 95772356
location 24228039 ~ 24231869 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

aagaaaaaagtatttaataagaatatttcattcattcagatctaggatgtgttattttagtgttccctttatttttttgagcagtgtatatatatgatATGGTATCAACTAAGTAAATGCAGGTCTTCCAGATTGTTTGTGTATACTGGTATGTACTTTATCCTTATTCTTACAAATGCCATTGAACTCTTTTATCATaacgtttatttttttttgttgtagaaGAGAGGTGTGTGATTATAACAATTGTTGTGTTGTAAGTGTGACAGAATTCATCCGGAGTGATCATGAGTCTCATGAGTGCCCATatggggggaaaaaatacatttcaaatataTGTTTTGATAAATTATTTAGGATACATgtgaaattttaaaaaattggcgaaataatgcatttttatttattgaataCACTTTAAATACATTCCAACATAAATTACAGAATATATTTAAAAGGTTTATATCAATGTGTATAAAATGTATATCACAATATATGTTAAAGTCatcaaaaaatgtatttaatgtattttaAAATGCATTCTGAAATACATTAAAGATGTATTTTAGAATATATTTTGACATGTATTTGGAAGTGTTTTGTTAAATATATTCCAACatgcatttaaatgtatttgtaagaaatatatttttttattaaaatgtaTGGCAAACATGAAAAAAAAATGCCAAATCGTATTGCAGCAAAATGGTGACTGTCTTAACAATGAAGCTTTAGTAGGCTCTTTGGTATCACATGCAGTTATGTGAGTCTCATTAAGACTGCAGAACTGTCAGTCTACAAGCTTAACATTtaagcacagaacacaacataacacattaAGTGTCATGTCAATTTGTCACATGAGAGGCTAAAAAGACACGCCCCAACAAGCCACACCTCCAAGTCTTCTAATAGGCTGCCACTATTACACAATCCATCTTGTCAAAATACATTTATTGTACTTGACACATACCAAAAGCACTAACATGAATATACATGCatttaaatgacaaaaaaaaaaactacaaacaTGATACATTATCGGTCAGTGAatgtgcatatgacaaataaacaaacaaacttgATGAGAGCATTGCAACCAATGTCCTACGGGCAGAATTTAACATGTGCTGGGTCGTTCCACAAAAATAGTGCCTTTTTGCGTCCCTTTTATATGTTAAGTATAAATTATACACCACTATTGAATTTTGAAAGCCTGTTATATGAAATTAAGTGCCCTTTGATATAGACCATAAGGATAATTCAATAAATCTGATTTTCAATATGAATAAAGCTTCCaatccccctgtcacaaggggatttatggctgatttaactAGTAGTTACCAGTTGGAGGGCCATTCAAATGTGTTTTTCCCAGATTTGGTAAATTCCCAATTGGTTACGAACGCACCATAACACCACTAACCATCCTCTGTAGAGCTGCTATAACACCACTAACCATCCTGTAGAGCTGCTATAACACCACTAACCATCCTCTGTAGAGCTGCTATAACACCACTAACCATCCTCTGTAGAGCCGCTATAACACCACTAACCATCCTCCAAAGAGCCGCTATAACACCACTAACCATCCTCTGTAGAGCTGCTATAACACCACTAACCATCCTCTGTAGAGCTGCTTTAACACCACTAACCGTCCTCTCTAGAGCTGCTATAACACCACTAACCGTCCTCTCTAGAGCTGCTATAACACCACTAACCGTCCTCTCTAGAGCTGCAATAACACCACTAACCATCCTCTGTAGAGCCGCTATAACATCACTAACCATCCTCTGTAGAGCTGCTATAACACCACTAACCATCCTCTGTAGAGCCGCTTTAATACCACTAACCATCCTCTGTAGAGCCTCTATAACACCACTAACCGTCCTCTCTAGAGCTGTTATAACACCACTAACCATCCTCTGTAGAGCTGCTATAACACCACTAACCATCCTCTGTAGAGCCGCTATAACACCACTAACCATCCTCCGTAGAGCCGCTATAACACCACTAACCATCCTCTGTAGAGCCTCTATAACACCACTAACCATCCTCCGTAGAGCCGCTATAACACCACTAACCATCCTATGTAGAGCCTCTATAACACCACTAACCATCCTCTGTAGAGCTGCTATAACACCACTAACCATCCTCTGTAGAGCTGCTATAACACCACTAACCATCCTCTGTAGAGCCTCTATAACACCACTAACCATCCTCTGTAGAGCTGCTATAACACCACTAACCATCCTCTGTAGAGCTGCTATAACACCACTAACCATCCTCTGTAGAGCCTCTATAACACCACTAACCATCCTCTGTAGAGCTGCTATAACACCACTAACCATCCTCTGTAGAGCCTCTATAACACCACTAACCATCCTCTGTAGAGCCTCTATAACACCACTAACCATCCTCTGTAGAGCCGCTTTAATACCACTAACCATCCTCTGTAGAGCCTCTATAACACCACTAACCATCCTCTGTAGAGCTGTTATAACACCACTCATTGGAAGCACAAGACCTAGACCTACACTTTGACATATTGTGGAGCGTTGTATGATGTATCGTTTTTGTTTGAATTGATAAAACAttttataataataaaaacagcCTTGTGCCcaatgtttttattatttaattAAGCTGAAGAGGGGCACTTACTAAAagcctgtttgttttttttatggggaaaacatattttttatgaagttgaacatgtgctctttatgacagaatgaaATAATTAGgtgaaatcaaatgtttttatttgtactCACCATCATAAATGATATCACTGCCTAAGTTTTTCCCAATTAGGAACCACTTTGACACCCTTTAGACTAGATGTCATAGCCATGCGTTTCCGGAATACATGCATTTTAGTAAAGATGCAAATGTATCTACATGtatttgaaatatattttacgTTACGTTAAAtatattgaaatgtattttttttttcgtATGGGGGAGGATACCTGTAAAATGTTGTTGGATTTGCCTTGTGATTTGTGTATACATTTTGTCTGTCTAGTGTTTTCTGAGCGAACGTACTGCTACTACTCTAAGAGATACAGCTTGATCAAATCAGAAATCCTACTCTAGTCTAGATGGGAACTAGCTATTATGCAAGGAACAAATGTTATTGGTGAGTGTTACAGTACGAGTGTCTTCAGAAAGCTGTGTTCTTTCTCATCAGTGGAATGCCCAGAGGAACGATGGAACAGTGGTACACGGAAATCCCATGCTACTGAATGCGAGCAGAATGAATGGCGTAGTCTCAGCCCCCTCGTTGTGGAAGAGAAGAGTGTAGTGATGGACACAGATCACTAACCTTAGCTGGCACATATATGATATGAACACGCCAACTCCACCTCCCCTGTCTTCTTTCCTCTTCTGTCATTGGACGGGGGTGGGCCTCGGATTCCACCAACCAGCTGTCTGGTCCTCCTCCACACCTGGCCTGGAGTCAGCTGACTGAGgtgtgtccatctgtctgtcggCCCATTGACCC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU28316 lncRNA downstream 49611 24170333 ~ 24178502 (-) True G24550
TU28246 lncRNA downstream 110323 24116799 ~ 24117790 (-) True G24507
TU28242 lncRNA downstream 115465 24111044 ~ 24112648 (-) True G24504
TU28255 lncRNA downstream 123663 24103548 ~ 24104450 (-) True G24515
TU28254 lncRNA downstream 131221 24096576 ~ 24096892 (-) True G24514
TU28395 lncRNA upstream 76730 24308599 ~ 24308889 (-) True G24621
TU28449 lncRNA upstream 183233 24415102 ~ 24415964 (-) True G24670
TU28451 lncRNA upstream 185084 24416953 ~ 24417509 (-) True G24672
TU28454 lncRNA upstream 194454 24426323 ~ 24426650 (-) True G24675
TU28458 lncRNA upstream 208953 24440822 ~ 24441043 (-) True G24679
XM_021593038.2 mRNA downstream 101485 24119224 ~ 24126628 (-) True ccdc113
XM_036973051.1 mRNA downstream 125189 24091604 ~ 24102924 (-) False LOC118948024
XM_021592634.2 mRNA downstream 155703 24050309 ~ 24072410 (-) True uba2
XM_021592683.2 mRNA downstream 178680 24034225 ~ 24049433 (-) True LOC110512077
XM_036972886.1 mRNA downstream 178683 24034225 ~ 24049430 (-) False LOC110512077
XM_021593323.2 mRNA upstream 1347 24233216 ~ 24288176 (-) True LOC110513500
XM_021593400.2 mRNA upstream 65829 24297698 ~ 24343156 (-) True LOC110513605
XM_021593578.2 mRNA upstream 176176 24408045 ~ 24410610 (-) True LOC110513914
XM_021594017.2 mRNA upstream 320523 24552392 ~ 24554074 (-) False LOC110514811
NM_001165110.1 mRNA upstream 364216 24596085 ~ 24602378 (-) False ciapin1
TU28304 other downstream 1623 24222907 ~ 24226490 (-) True G24542
TU27396 other downstream 401622 23822700 ~ 23826491 (-) True LOC110511130
TU26999 other downstream 603764 23624026 ~ 23624349 (-) True G23394
TU25921 other downstream 1384808 22839845 ~ 22843305 (-) True G22350
TU25520 other downstream 1845905 22381870 ~ 22382208 (-) True G21993
TU28501 other upstream 320722 24552591 ~ 24553562 (-) True LOC110514811
TU28721 other upstream 632218 24864087 ~ 24864834 (-) True znf276
TU28795 other upstream 696479 24928348 ~ 24938701 (-) False LOC118956210
TU28762 other upstream 713039 24944908 ~ 24951387 (-) False LOC110518671
TU28960 other upstream 1048723 25280592 ~ 25281030 (-) True G25115

Expression Profile