RNA id: TU28520


Basic Information

Item Value
RNA id TU28520
length 1407
lncRNA type antisense_over
GC content 0.42
exon number 3
gene id G24734
representative True

Chromosome Information

Item Value
chromosome id NC_048565.1
NCBI id CM023219.2
chromosome length 95772356
location 24504063 ~ 24506153 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

TCTACATGCATTTTAATGAATTGAAGGCAGTAAAACAGAATATAGGCCTATAACGTACAATTCAGTAATCAAGAATACTTAAATGTAACATAACCTGGAACTACACTCAAATTCTACACAATTATGTGTTTTACGGATGTGTGTATCgagtttaatttaaaaaataaatattgacaATCGTTCTGTCAAATCAATCTCTGTCATTTGATCACAGGCAACAAATGCTAAAGAGAAAGGTATACAGGCTGCTCACAGTGTTACAGTTATATAGAGATCATCTAGCTTATCTATTTCCCCAGATCCAGGTGGTGTTTTGGCTCAGGACCATGACTGCTCTCTCTGAGGCAGATCACTGGCCATGTCCTTGTGAAATAGAGGTACAAAAGAGGTTCTGAAGGATTTGCTTTGATGTTGACGCAGCTGACGGTCCGATCACCATGGTTACAGGAGTGGTGTCTGCTCCCCAGACTTCTTGCTGTCCAGGAAGTTGATGTAGTCCTTCACCCATCTGTCTGAGGACCTGGCACACACCTGTCGCCCCGCCCGAGTCTTAAACAGAATGGCTGGGTTGGAGCACTGCTGGCTGGTCTTGGTGTAACCCACCACTCTACCTCTGGGTATCTGACGATCAGCAAAGGTAAAACAACATTTCTTCGGTCCGCTTGCCATAcgcaggcCTTCGGTAAAAGTGATGGCACTGAGTACCAGAACAAGCACAGACAGCATAGCAAGACGAGGGGTGAACATGCTGGCTTAGAGTTGGTCCAGGTAGGGTGGAGAGTGAATGAGGAGTAAAGTGTTGTGACTTCAGGTGTCAAGCTTTATTCTCTGCGTTGTGGTGGTGTACAGAGGACCAGTCTTTATACTATCAAGGTGGAGTTAGGGGGAGACCCAGACAAGGGTCTCCCCCTAACGATTGTCTCGGTCAGGTTTTTCCCATCTAATTGTTAAACATTTAAGTCGTGTGCTTTTGAGTGTGTGTCATCCCATCCCATCAGTGTCATGATTCTTCTATGACGTGACTGTATTTCACTTCTCTTTTTCAGCATTGGGTTTTACATCAGAAGTATACATATGATTGTGAATTCACTATGAAGAAAAGCCCATGTGGGATTTTTAGATTCTATTCATCTGTTCATCAACAAAAATATTCTTGGAGTTATTGAAACTTAGAGAAGGAGAGTTTGTACTTAGTGACTTAGTACATGAGATTTATATACTGGACGTAGTCTATAATGTACTGTACAAATAGCTGTGTGACGTACAATAGCTCAGTatcttgttatttattttatacagtcatttttgtTCATCTTTATCAAGGATGCCAATAATTGTGGGCGCAACTGTACATACAGAGCATtaaggaagtattcagaccccttgacttattccacattatgttac

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU28464 lncRNA downstream 52974 24450729 ~ 24451089 (-) True G24685
TU28459 lncRNA downstream 62226 24441592 ~ 24441837 (-) True G24680
TU28458 lncRNA downstream 63020 24440822 ~ 24441043 (-) True G24679
TU28454 lncRNA downstream 77413 24426323 ~ 24426650 (-) True G24675
TU28451 lncRNA downstream 86554 24416953 ~ 24417509 (-) True G24672
TU28537 lncRNA upstream 21466 24527619 ~ 24527903 (-) True G24751
TU28540 lncRNA upstream 24649 24530802 ~ 24531013 (-) True G24754
TU28542 lncRNA upstream 26654 24532807 ~ 24533125 (-) True G24756
TU28543 lncRNA upstream 27189 24533342 ~ 24533611 (-) True G24757
TU28544 lncRNA upstream 27739 24533892 ~ 24534269 (-) True G24758
XM_021593578.2 mRNA downstream 93453 24408045 ~ 24410610 (-) True LOC110513914
XM_021593400.2 mRNA downstream 160907 24297698 ~ 24343156 (-) True LOC110513605
XM_021593323.2 mRNA downstream 215887 24233216 ~ 24288176 (-) True LOC110513500
XM_021593038.2 mRNA downstream 377435 24119224 ~ 24126628 (-) True ccdc113
XM_036973051.1 mRNA downstream 401139 24091604 ~ 24102924 (-) False LOC118948024
XM_021594017.2 mRNA upstream 46239 24552392 ~ 24554074 (-) False LOC110514811
NM_001165110.1 mRNA upstream 89932 24596085 ~ 24602378 (-) False ciapin1
XM_036946489.1 mRNA upstream 89934 24596087 ~ 24602486 (-) False ciapin1
XM_021558348.2 mRNA upstream 89934 24596087 ~ 24611486 (-) False ciapin1
XM_021559670.2 mRNA upstream 89934 24596087 ~ 24611535 (-) True ciapin1
TU28304 other downstream 277573 24222907 ~ 24226490 (-) True G24542
TU27396 other downstream 677572 23822700 ~ 23826491 (-) True LOC110511130
TU26999 other downstream 879714 23624026 ~ 23624349 (-) True G23394
TU25921 other downstream 1660758 22839845 ~ 22843305 (-) True G22350
TU25520 other downstream 2121855 22381870 ~ 22382208 (-) True G21993
TU28501 other upstream 46438 24552591 ~ 24553562 (-) True LOC110514811
TU28721 other upstream 357934 24864087 ~ 24864834 (-) True znf276
TU28795 other upstream 422195 24928348 ~ 24938701 (-) False LOC118956210
TU28762 other upstream 438755 24944908 ~ 24951387 (-) False LOC110518671
TU28960 other upstream 774439 25280592 ~ 25281030 (-) True G25115

Expression Profile