RNA id: TCONS_00027305


Basic Information

Item Value
RNA id TCONS_00027305
length 961
lncRNA type antisense_over
GC content 0.40
exon number 2
gene id XLOC_013429
representative False

Chromosome Information

Item Value
chromosome id NC_007129.7
NCBI id CM002902.2
chromosome length 51023478
location 23401130 ~ 23403453 (-)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

CAACTGAAGAAGTAGGGGGGGTGCATGGTAGATGAGCAAGGCATTCTGGGTATGCAAATGAGCCGAATGAGACGCAGTAACAGAGGCATCAGGAGAGACGCCCTGCCAGACACGGCCGATCTAATGAGTAGCCTCTTCTGTCACCAACGCACTGAAGCCTGGGAGAAGCCATCCCAAAGAGGGGGAGGAGAAATCAAGGATGATCTGACCTTGCTCCTGACCCGCTGGTCTCCAAGTCTAAAGCGGACGTAAACGTCTCCTTGTCCACAGTCTGGCATGTCCTGTCCTTCCACCAAGATAACAGTGTAAACGCCTGACCAAACCTGACTCTTTGTGAACCGCCCAAACTGCGCCTGGCTTATCGGTTGACCCTGGAACAGACAATACAGGCAATAATTTACAGAAGTTATTCATCTGACATTTGTTGATCATAAACATGTTTTTCTATGCTTCGATCAAATTAACATTCCATTTGAACATTGTTGCTACAATTCTACGGATTTGATGAAGTGTTGATGAAATGGTGAGAATGACTTGACCTGGAACCAGATTTGACCAAAGAAATGTTTGTGCTGTTTTATAAAATACTGTAGCATTGAGAAAATAGTGCAGTTATTAGTTTACAGCTATGTATAGAAATAACAAATACTTTATTAAGTTAAACAATGTGTCTGCAAAAAGCCTTTGTTGCCAGGTATTTAGTATTTTTCTAACTATCATTTAGTTTAAGAGGGCAAaaactttttcacacagggctctGTAGTTTTGGATTTAGTTTTcccttaataaaaacatttatttcaaaacagCATGAAGAGATGATATGATGATGATGTGATATGAatcattaaagtgtgacaaacatgcaaaaaaaaataagaaatcagtaagcAGCAAACACTTATTCAGACCACTGTATATATAAACTCATTAATTTAGCTTCAGCTAATGCGGAAGTCAC

Function

GO: NA

KEGG:

id description
ko03230 Viral genome structure
ko05164 Influenza A
ko03200 Viral proteins

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00027303 lncRNA downstream 205576 23186729 ~ 23195554 (-) True XLOC_013428
TCONS_00027302 lncRNA downstream 210228 23186729 ~ 23190902 (-) False XLOC_013428
TCONS_00027301 lncRNA downstream 211048 23186729 ~ 23190082 (-) False XLOC_013428
TCONS_00026517 lncRNA downstream 211205 23186729 ~ 23189925 (-) False XLOC_013428
TCONS_00027300 lncRNA downstream 212829 23186729 ~ 23188301 (-) False XLOC_013428
TCONS_00027306 lncRNA upstream 36009 23439462 ~ 23598642 (-) False XLOC_013430
TCONS_00027307 lncRNA upstream 47500 23450953 ~ 23598642 (-) False XLOC_013430
TCONS_00026964 lncRNA upstream 47500 23450953 ~ 23598675 (-) False XLOC_013430
TCONS_00027308 lncRNA upstream 63281 23466734 ~ 23598642 (-) False XLOC_013430
TCONS_00026965 lncRNA upstream 78725 23482178 ~ 23598642 (-) False XLOC_013430
TCONS_00026514 mRNA downstream 647493 22739732 ~ 22753637 (-) False XLOC_013426
TCONS_00026515 mRNA downstream 647493 22746506 ~ 22753637 (-) True XLOC_013426
TCONS_00026512 mRNA downstream 666128 22721551 ~ 22735002 (-) True XLOC_013425
TCONS_00026511 mRNA downstream 683457 22716708 ~ 22717673 (-) True XLOC_013424
TCONS_00026510 mRNA downstream 687728 22712683 ~ 22713402 (-) True XLOC_013423
TCONS_00026521 mRNA upstream 465197 23868650 ~ 23875370 (-) False XLOC_013432
TCONS_00026522 mRNA upstream 466949 23870402 ~ 23875219 (-) False XLOC_013432
TCONS_00026524 mRNA upstream 470002 23873455 ~ 23874929 (-) False XLOC_013432
TCONS_00026532 mRNA upstream 1530020 24933473 ~ 24989580 (-) False XLOC_013440
TCONS_00026533 mRNA upstream 1535239 24938692 ~ 24988661 (-) False XLOC_013440
TCONS_00026516 other downstream 538663 22859479 ~ 22862467 (-) True XLOC_013427
TCONS_00026513 other downstream 657764 22739732 ~ 22743366 (-) False XLOC_013426
TCONS_00026504 other downstream 848874 22550595 ~ 22552256 (-) False XLOC_013420
TCONS_00026501 other downstream 1317244 22083772 ~ 22083886 (-) True XLOC_013417
TCONS_00026485 other downstream 1681079 21712296 ~ 21720051 (-) True XLOC_013411
TCONS_00026523 other upstream 469891 23873344 ~ 24023013 (-) False XLOC_013432
TCONS_00026525 other upstream 869975 24273428 ~ 24476114 (-) False XLOC_013435
TCONS_00026526 other upstream 912728 24316181 ~ 24316299 (-) True XLOC_013436
TCONS_00026527 other upstream 984566 24388019 ~ 24476883 (-) False XLOC_013435
TCONS_00026529 other upstream 1156734 24560187 ~ 24560397 (-) True XLOC_013437

Expression Profile

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