RNA id: TU28757


Basic Information

Item Value
RNA id TU28757
length 1210
lncRNA type inter_gene
GC content 0.40
exon number 1
gene id G24945
representative True

Chromosome Information

Item Value
chromosome id NC_048565.1
NCBI id CM023219.2
chromosome length 95772356
location 25041560 ~ 25042769 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

tatttatatatatattccctGTTGACATTTTAAAAGCAGACATTTCAGGAGCTCTGCTCTGCGGTTGCAACATCCATTAAAAGGAAAACATGTTTGTACATAACTCCCATATTTAATAGAATGGTTGTGCAGTAGGTGGTCTGAGACTGCCTTGTATTTATGATTTCTCTCTTCATATCCCGTTTTTCTGCCTCCCCTAATTTTGTCATATACCTTTTTTTTCACTTTCTAGGCAATTTATCCATAATCCATGTTGTGGCTTCAACAGAGGCCCCATGTGCACCTTGCATCAACCTCTCAATGTTGCCTTTTTGGCATGATGGGGCATGTTTTTATAGAGATTAATATTAGACACTTTTTGCTAGTGGATGTAGATATACAGGCCATGGTCATCCTTAATGGGATAGGAATATTTTGTCATTGTCAGGAGTGAAGAGGCTCTGTAGAGGCAACAGCATGGTGTGTAGATGACCCTGATAAAAAAAGGGGCACATTAACTGCCCAAAGTGTCTAGACTAAGATTTTAATTCACAATTGTTTGCCATACTGTACTTCAAAAAAGAAACTATTGCATCAAACATCAGTACTGTCTGAAACGTGACATAACGGTTGATTCTAATGTGCTAATCATTCATTCACAGAACCACATTTCTCTCTACTCCCCATCAAGCATGGCGAGAGGACACTGTTTGGAGCATCCTCACCCAGGAAAGTAGTACATGTATCTCGGTTAAAATGTTTTGCATTCAATCTTTATTTGAAACCCTAAGAACACTTTCTGTTTACATGGGCATACTGTGGACAAGTCCACTTTTTTAAACCACCTGTTTTGAATTGATTTGCCATATTGTTACCAAGGAATGTTATTTCAGCATTCAGGTATGTGACTTTGCCCACACAAACAGCAGAACAGTGTTGTCCTCTGTGTCACTTCTCTTCTGCTGTAGGTGGCTTTGATCAATCTGTCCCTTCTCTGTGCCCTTTCAGGGTCTTACACAATCAGATTGTTCTTTTGACTGCCCTACTCTGGTCCCATCCACTTCTTGTTTTTTCAGAATTCTCTAGAATTCTGTTCAGTTTTGGCAGAACTTAAATAACACAGAGTTGGACACCGTCCAATAAGAGTTCAATGCTATGTTTATTTTGAGTGCCATTACGGTTACTGGCACTACATTTCATCTGGCTTAGGACCTCATGCTGTCACTtcctg

Function

GO: NA

KEGG:

id description

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU28777 lncRNA downstream 42550 24998546 ~ 24999010 (-) True G24959
TU28760 lncRNA downstream 69095 24948044 ~ 24972465 (-) True LOC110518671
TU28827 lncRNA downstream 76068 24960016 ~ 24965492 (-) True G24985
TU28821 lncRNA downstream 89220 24946680 ~ 24952340 (-) True G24979
TU28791 lncRNA downstream 102859 24928348 ~ 24938701 (-) False LOC118956210
TU28765 lncRNA upstream 134 25042903 ~ 25044176 (-) True G24948
TU28853 lncRNA upstream 23121 25065890 ~ 25066926 (-) True G25011
TU28770 lncRNA upstream 43305 25086074 ~ 25087355 (-) True G24952
TU28772 lncRNA upstream 45893 25088662 ~ 25089255 (-) True G24954
TU28764 lncRNA upstream 67676 25110445 ~ 25111181 (-) False LOC110519226
XR_005046131.1 mRNA downstream 21172 25012181 ~ 25020388 (-) True LOC118956655
LOC110518671 mRNA downstream 88246 24949834 ~ 24953314 (-) False LOC110518671
LOC118956210 mRNA downstream 128865 24910984 ~ 24912695 (-) False LOC118956210
XM_021595703.2 mRNA downstream 135916 24898911 ~ 24905644 (-) True LOC110517792
XM_021595392.2 mRNA downstream 176402 24853824 ~ 24865158 (-) False znf276
XM_036974229.1 mRNA upstream 1676 25044445 ~ 25083238 (-) True LOC110519016
XM_021596479.2 mRNA upstream 46527 25089296 ~ 25108874 (-) False LOC110519226
XM_036974277.1 mRNA upstream 46528 25089297 ~ 25112229 (-) False LOC110519226
XM_036974279.1 mRNA upstream 46528 25089297 ~ 25112229 (-) False LOC110519226
XM_021596436.2 mRNA upstream 46528 25089297 ~ 25112231 (-) False LOC110519226
TU28762 other downstream 90173 24944908 ~ 24951387 (-) False LOC110518671
TU28795 other downstream 102859 24928348 ~ 24938701 (-) False LOC118956210
TU28721 other downstream 176726 24864087 ~ 24864834 (-) True znf276
TU28501 other downstream 487998 24552591 ~ 24553562 (-) True LOC110514811
TU28304 other downstream 815070 24222907 ~ 24226490 (-) True G24542
TU28960 other upstream 237823 25280592 ~ 25281030 (-) True G25115
TU28962 other upstream 238835 25281604 ~ 25282018 (-) True G25117
TU32221 other upstream 2593319 27636088 ~ 27643120 (-) True LOC110520292
TU33047 other upstream 3014674 28057443 ~ 28062450 (-) False G28870
TU33049 other upstream 3014674 28057443 ~ 28066305 (-) True G28870

Expression Profile