RNA id: TU28770


Basic Information

Item Value
RNA id TU28770
length 1282
lncRNA type inter_gene
GC content 0.39
exon number 1
gene id G24952
representative True

Chromosome Information

Item Value
chromosome id NC_048565.1
NCBI id CM023219.2
chromosome length 95772356
location 25086074 ~ 25087355 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

ttttttctgaggtcttggctgatttctattgatttttccatgatgtcaagcaaagaggcactgagtttgaaggtaggtcttgaaatacatccacaggtgcacctccaattcactccaattatgtcaattagcctatcagaagcttctaaaaccatgacatcattttctggaattttacaagctgtttaaatgcacagtcgacttggtgtatgtaaacgtctgacccactggaattgtgatacagtgaattataatctgtaaacaattgttggaaaaattacgtaaaaatagatgtcctaaccaacttgccaaactatcttttgttaacaagaaatttgtggagtggttgaaaaacaggttttaatgactccaacctaagtgtatgtaaacttctgacttcaactgtatatggagccctctgcattgttacaaaatttgggagGTCCATGGCGATGCGGTACAGATCTCAATTTGGCATCTTTATGCCTCCGGAGGCTCTGCAATTGCGTCGCACCCTCCATTAGGGAGACTCGgaccacattttcggatcaagcataaattggatTTTAAGTTGCTGGGTGTAATTGGCTGATGACCTTTTGAACTGGCTTTTCAGTCAGTGGACAAATTTGGCATCTGTTGACCCCATTTGTTCTGTGTGAGTTACAGCTGTTGCTTTCCGTCTCAATAGAAGGGCAACTCATCACCTATACActacagcacacacagacacatacagtattagagaaaatgcattcacacacacacacttaatgccTTATTAATGCAGCCAACAGAGCtcaggacaaaaaaaaaaaaagcaccaaGAACAcatattatactgtatcacaatcTCCACTTAACACTGTTTACTTGCAGCATGTTACAGTGTATTGCTGAGAGATACTCAACATTCCAGTGTCCCTCACACAGTTTAAACACTATCCACATTCAGTGGTCGAAACAGTGCTTTCACAAAACATTCACCCATTGTGTAGCTATCAAAACACTTTGATGCACTTAAGCACTGTTCTTCTGGGAATTCTGCAATAGTACCATCAAGTGGTTGTTAACCAAAATAGGGATGTGAGAGGAACATAAATTCAAAgctatttgtattttgtattcaaTTCTGTGGTGTAGCAAGGAAGGTGTCATGGAATGAGCTCAATCATGAGTGTCTTTTGGTTTAACAAAATCGATTAAACACGACTCTGTGTGGTCAACTGGGTAGTTATTCCTCTGTGACTTCAGCCCTGCTTGAAGTGGTTTAAATCGGGTA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU28853 lncRNA downstream 19148 25065890 ~ 25066926 (-) True G25011
TU28765 lncRNA downstream 41898 25042903 ~ 25044176 (-) True G24948
TU28757 lncRNA downstream 43305 25041560 ~ 25042769 (-) True G24945
TU28777 lncRNA downstream 87064 24998546 ~ 24999010 (-) True G24959
TU28760 lncRNA downstream 113609 24948044 ~ 24972465 (-) True LOC110518671
TU28772 lncRNA upstream 1307 25088662 ~ 25089255 (-) True G24954
TU28764 lncRNA upstream 23090 25110445 ~ 25111181 (-) False LOC110519226
TU28766 lncRNA upstream 23963 25111318 ~ 25112992 (-) True LOC110519226
TU28868 lncRNA upstream 26575 25113930 ~ 25114287 (-) True G25026
TU28872 lncRNA upstream 36647 25124002 ~ 25124227 (-) True G25030
XM_036974229.1 mRNA downstream 2836 25044445 ~ 25083238 (-) True LOC110519016
XR_005046131.1 mRNA downstream 65686 25012181 ~ 25020388 (-) True LOC118956655
LOC110518671 mRNA downstream 132760 24949834 ~ 24953314 (-) False LOC110518671
LOC118956210 mRNA downstream 173379 24910984 ~ 24912695 (-) False LOC118956210
XM_021595703.2 mRNA downstream 180430 24898911 ~ 24905644 (-) True LOC110517792
XM_021596479.2 mRNA upstream 1941 25089296 ~ 25108874 (-) False LOC110519226
XM_036974277.1 mRNA upstream 1942 25089297 ~ 25112229 (-) False LOC110519226
XM_036974279.1 mRNA upstream 1942 25089297 ~ 25112229 (-) False LOC110519226
XM_021596436.2 mRNA upstream 1942 25089297 ~ 25112231 (-) False LOC110519226
XM_021596672.2 mRNA upstream 67370 25154725 ~ 25172551 (-) False kiaa0513
TU28762 other downstream 134687 24944908 ~ 24951387 (-) False LOC110518671
TU28795 other downstream 147373 24928348 ~ 24938701 (-) False LOC118956210
TU28721 other downstream 221240 24864087 ~ 24864834 (-) True znf276
TU28501 other downstream 532512 24552591 ~ 24553562 (-) True LOC110514811
TU28304 other downstream 859584 24222907 ~ 24226490 (-) True G24542
TU28960 other upstream 193237 25280592 ~ 25281030 (-) True G25115
TU28962 other upstream 194249 25281604 ~ 25282018 (-) True G25117
TU32221 other upstream 2548733 27636088 ~ 27643120 (-) True LOC110520292
TU33047 other upstream 2970088 28057443 ~ 28062450 (-) False G28870
TU33049 other upstream 2970088 28057443 ~ 28066305 (-) True G28870

Expression Profile