RNA id: TU28955



Basic Information


Item Value
RNA id TU28955
length 228
lncRNA type intronic
GC content 0.46
exon number 1
gene id G25110
representative True

Chromosome Information


Item Value
chromosome id NC_048565.1
NCBI id CM023219.2
chromosome length 95772356
location 25273542 ~ 25273769 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence


GGATTAGTGCGAACGCTTGTTTCTAAAACATGATGAAAAGACGTTCCACGCGTGATAACGCTTTGAACTCTACACTCCTTCTAGGATCCTGCCTCTAGGCTTCATTTCCGCGAAAgacaggagggggaagagaggggaacgAAAGCAATATGTAAGTTAAGTTGCTCTTGCGGTAGCTGGTTTGGGTGAGTATCAATCAAACTGAGGTTGAACTCCCTTGTTTAAGCA

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU28884 lncRNA downstream 94869 25178355 ~ 25178673 (-) True G25042
TU28882 lncRNA downstream 96794 25176513 ~ 25176748 (-) True G25040
TU28879 lncRNA downstream 104026 25169281 ~ 25169516 (-) True G25037
TU28878 lncRNA downstream 113156 25159782 ~ 25160386 (-) True G25036
TU28756 lncRNA downstream 118321 25154751 ~ 25155221 (-) True kiaa0513
TU28959 lncRNA upstream 4696 25278465 ~ 25278687 (-) True G25114
TU28963 lncRNA upstream 8356 25282125 ~ 25282666 (-) True G25118
TU28965 lncRNA upstream 9754 25283523 ~ 25287060 (-) True G25120
TU28964 lncRNA upstream 13718 25287487 ~ 25288484 (-) True G25119
TU28978 lncRNA upstream 21296 25295065 ~ 25295323 (-) True G25130
XM_021596750.2 mRNA downstream 100956 25154725 ~ 25172586 (-) False kiaa0513
XM_021596711.2 mRNA downstream 100991 25154725 ~ 25172551 (-) False kiaa0513
XM_021596861.2 mRNA upstream 99061 25372830 ~ 25381856 (-) False LOC110519951
LOC118959932 mRNA upstream 185973 25459742 ~ 25463093 (-) True LOC118959932
XM_036974449.1 mRNA upstream 199767 25473536 ~ 25485212 (-) True LOC110520001
XM_021596965.2 mRNA upstream 263346 25537115 ~ 25566593 (-) True LOC110520008
XM_021596976.2 mRNA upstream 406140 25679909 ~ 25712438 (-) True LOC110520015
TU28762 other downstream 322155 24944908 ~ 24951387 (-) False LOC110518671
TU28795 other downstream 334841 24928348 ~ 24938701 (-) False LOC118956210
TU28721 other downstream 408708 24864087 ~ 24864834 (-) True znf276
TU28501 other downstream 719980 24552591 ~ 24553562 (-) True LOC110514811
TU28304 other downstream 1047052 24222907 ~ 24226490 (-) True G24542
TU28960 other upstream 6823 25280592 ~ 25281030 (-) True G25115
TU28962 other upstream 7835 25281604 ~ 25282018 (-) True G25117
TU32221 other upstream 2362319 27636088 ~ 27643120 (-) True LOC110520292
TU33047 other upstream 2783674 28057443 ~ 28062450 (-) False G28870
TU33049 other upstream 2783674 28057443 ~ 28066305 (-) True G28870

Expression Profile