RNA id: TCONS_00027309


Basic Information

Item Value
RNA id TCONS_00027309
length 789
lncRNA type inter_gene
GC content 0.47
exon number 4
gene id XLOC_013430
representative False

Chromosome Information

Item Value
chromosome id NC_007129.7
NCBI id CM002902.2
chromosome length 51023478
location 23439462 ~ 23608028 (-)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

CAGTTCCATATCCATGGCATCTTGTAGTGCAGCAGCGGTGACGAGCCTTGCTACCCTGTCACCTTGGCGTTTTCCCGCGCGCGCCCTCGAAGTCATTGCATTTCCATGGGCTATAGCGCCGCTCAGTGGATATGTCTGATCTTTTCTGCTCACTTACACTTCATGGAAATCTTAGACGATAATAATCAGAGACGTCATGTGCTTCACTCCTTTATTTTCTTGTTCGAATGTTTAAATTTGTAATTTCCCGGacgttatattatgttatattttctGTAATGATCCCTTAATAAGAAGCATTGCGCGTGACTCTGTAAACTGACCACGCGGTGTTTGTTGACGTAGTGTGTAGCCTGTTCACAAACACGACTGGAAGGAAATAACACTGTTGAAAAATAAGTCACAGATGCGGAAATCAGAGAAGGACCTTAAATGGGAGCAATTCTAGTTAAATAGAAGAAGATGGAGAATTATCGATCCCTTATCCCGAAGGTATCCACCGTATGCAGATGTCCCAAAGGTGCACCAGAGAAGGGTCCTGAGAGCGTCGGGGTGGTGGCCCAGCGCTGCACCCGCAACATTGTTGGAGCAGAGCACCATCTTCAGGAGCCAGACTGGAGCGGATACAAGAGCCCTGCAGCACACCAACACATGTGAACATCCTTTATGAGATTACAGCCCAACCTCAGATGCTGCCCGGCACACCGAGATCAGATCATGTTTATGGCAGATGTCCACCTTTGTCATCGAGTGGTCTTCAGTTCACCTGGATTCCATTGAACTTGAAGG

Function

GO: NA

KEGG:

id description
ko03230 Viral genome structure
ko05164 Influenza A
ko03200 Viral proteins

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00027305 lncRNA downstream 125633 23401130 ~ 23403453 (-) False XLOC_013429
TCONS_00027304 lncRNA downstream 125633 23401130 ~ 23403453 (-) True XLOC_013429
TCONS_00027303 lncRNA downstream 333532 23186729 ~ 23195554 (-) True XLOC_013428
TCONS_00027302 lncRNA downstream 338184 23186729 ~ 23190902 (-) False XLOC_013428
TCONS_00027301 lncRNA downstream 339004 23186729 ~ 23190082 (-) False XLOC_013428
TCONS_00027311 lncRNA upstream 87933 23686575 ~ 23833010 (-) False XLOC_013431
TCONS_00027312 lncRNA upstream 87933 23686575 ~ 23833908 (-) False XLOC_013431
TCONS_00027313 lncRNA upstream 231623 23830265 ~ 23832976 (-) False XLOC_013431
TCONS_00026520 lncRNA upstream 231623 23830265 ~ 23833909 (-) True XLOC_013431
TCONS_00027314 lncRNA upstream 278837 23877479 ~ 23884654 (-) False XLOC_013433
TCONS_00026514 mRNA downstream 775449 22739732 ~ 22753637 (-) False XLOC_013426
TCONS_00026515 mRNA downstream 775449 22746506 ~ 22753637 (-) True XLOC_013426
TCONS_00026512 mRNA downstream 794084 22721551 ~ 22735002 (-) True XLOC_013425
TCONS_00026511 mRNA downstream 811413 22716708 ~ 22717673 (-) True XLOC_013424
TCONS_00026510 mRNA downstream 815684 22712683 ~ 22713402 (-) True XLOC_013423
TCONS_00026521 mRNA upstream 270008 23868650 ~ 23875370 (-) False XLOC_013432
TCONS_00026522 mRNA upstream 271760 23870402 ~ 23875219 (-) False XLOC_013432
TCONS_00026524 mRNA upstream 274813 23873455 ~ 23874929 (-) False XLOC_013432
TCONS_00026532 mRNA upstream 1334831 24933473 ~ 24989580 (-) False XLOC_013440
TCONS_00026533 mRNA upstream 1340050 24938692 ~ 24988661 (-) False XLOC_013440
TCONS_00026516 other downstream 666619 22859479 ~ 22862467 (-) True XLOC_013427
TCONS_00026513 other downstream 785720 22739732 ~ 22743366 (-) False XLOC_013426
TCONS_00026504 other downstream 976830 22550595 ~ 22552256 (-) False XLOC_013420
TCONS_00026501 other downstream 1445200 22083772 ~ 22083886 (-) True XLOC_013417
TCONS_00026485 other downstream 1809035 21712296 ~ 21720051 (-) True XLOC_013411
TCONS_00026523 other upstream 274702 23873344 ~ 24023013 (-) False XLOC_013432
TCONS_00026525 other upstream 674786 24273428 ~ 24476114 (-) False XLOC_013435
TCONS_00026526 other upstream 717539 24316181 ~ 24316299 (-) True XLOC_013436
TCONS_00026527 other upstream 789377 24388019 ~ 24476883 (-) False XLOC_013435
TCONS_00026529 other upstream 961545 24560187 ~ 24560397 (-) True XLOC_013437

Expression Profile

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