RNA id: TU29011


Basic Information

Item Value
RNA id TU29011
length 649
lncRNA type inter_gene
GC content 0.48
exon number 1
gene id G25163
representative True

Chromosome Information

Item Value
chromosome id NC_048565.1
NCBI id CM023219.2
chromosome length 95772356
location 25328012 ~ 25328660 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

catcctctactgtcgggatgaggtcaatgtcgttccaggataccccggccaggtcgattagaaaggcctgctcgcagaagtgttttagggagcgtttgacagtgatgaggggtggtcgtttgctcgcagacccattacggatgcaggcaatgaggcagtgatcactgagatcttagttgaaaacagcagaggtgtatttggagggtgagttagttagaatgatatctatgagggtgctcgtgtttacggatttggggttatatctggtaggttcattgataaattgtgtgagattgagggcatccagcttagattgtaggatggccggggtgttaagcatgtcccagtttaggtcacctagcagcacgagctcagaagatagatggggggcaatcaaatcacatatggtgtcgagggcacagctgggggcagagggtggtctatagcaagcggcaacggtgagagacttgtttctggaaaggtgaatttttagaactagaagctcaaattgtttgggtacagacctggatagtaagacagaactctgcaggttatctttgcagtaaattgcaacaccgccccctttggcagttctatcttgtcggaaaatgtaaTAGGGAACTCTGCAGCTATTACCCCAACTCTAACA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU29009 lncRNA downstream 1044 25326687 ~ 25326968 (-) True G25161
TU29003 lncRNA downstream 8875 25318840 ~ 25319137 (-) True G25155
TU28996 lncRNA downstream 16640 25311036 ~ 25311372 (-) True G25148
TU28993 lncRNA downstream 18903 25308717 ~ 25309109 (-) True G25145
TU28980 lncRNA downstream 31925 25295832 ~ 25296087 (-) True G25132
TU29019 lncRNA upstream 6629 25335289 ~ 25335509 (-) True G25171
TU29029 lncRNA upstream 15970 25344630 ~ 25345013 (-) True G25181
TU29090 lncRNA upstream 37466 25366126 ~ 25366573 (-) True G25236
TU29092 lncRNA upstream 50414 25379074 ~ 25381869 (-) False LOC110519951
TU29103 lncRNA upstream 50570 25379230 ~ 25381869 (-) True LOC110519951
XM_021596750.2 mRNA downstream 155426 25154725 ~ 25172586 (-) False kiaa0513
XM_021596711.2 mRNA downstream 155461 25154725 ~ 25172551 (-) False kiaa0513
XM_021596861.2 mRNA upstream 44170 25372830 ~ 25381856 (-) False LOC110519951
LOC118959932 mRNA upstream 131082 25459742 ~ 25463093 (-) True LOC118959932
XM_036974449.1 mRNA upstream 144876 25473536 ~ 25485212 (-) True LOC110520001
XM_021596965.2 mRNA upstream 208455 25537115 ~ 25566593 (-) True LOC110520008
XM_021596976.2 mRNA upstream 351249 25679909 ~ 25712438 (-) True LOC110520015
TU28962 other downstream 45994 25281604 ~ 25282018 (-) True G25117
TU28960 other downstream 46982 25280592 ~ 25281030 (-) True G25115
TU28762 other downstream 376625 24944908 ~ 24951387 (-) False LOC110518671
TU28795 other downstream 389311 24928348 ~ 24938701 (-) False LOC118956210
TU28721 other downstream 463178 24864087 ~ 24864834 (-) True znf276
TU32221 other upstream 2307428 27636088 ~ 27643120 (-) True LOC110520292
TU33047 other upstream 2728783 28057443 ~ 28062450 (-) False G28870
TU33049 other upstream 2728783 28057443 ~ 28066305 (-) True G28870
TU33578 other upstream 3375227 28703887 ~ 28704356 (-) True G29355
TU34164 other upstream 3951616 29280276 ~ 29280700 (-) True G29906

Expression Profile