RNA id: TU31456


Basic Information

Item Value
RNA id TU31456
length 2095
lncRNA type antisense_over
GC content 0.43
exon number 1
gene id G27476
representative True

Chromosome Information

Item Value
chromosome id NC_048565.1
NCBI id CM023219.2
chromosome length 95772356
location 27132927 ~ 27135021 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

GACAAACAGTTGGCCTTTATTAACTTTACCAGCCTGTGGAAATCAAATATACACCCTGTCTTTCAAGTAGCCGTGAGATACCCACAGAACGCCTATGCCCTCATTGGTGATGTCACTGCATTTCCTTTCTCGTAGAAATCTTAAAAGGGAAAAAAATGTCAAACATCAGTGACTGATATCCTTTACATTATATAGAGAAGAAACAACAGAAAGGGGACTTGGATACAGAGTCCAAAGTTTTACCCCACTGGTAGAAGACACTGACAAACCTCTCCAAAAAGAGTTGGATGTTAGTTATACACAATGGATGCATCTTGTTATACAAAACTAAAGCTATACACAACGGAAGCAAATTGTTTATCATAATAGCCAGGCCACTCatctgtctgtttttttttttttagcaataaGTGCTCCAGTAGCAATTAGCCCCTGACAGCTTGGTTCACAGTGACCTCTGCTGGCTGGTGACTGGggtcttatcaaatcaaattttgtcacatgcgccgaatacaacaggtgtagacattacagtgaaatgcttacttacacgcccttaaccaacaacgcagttaagaaaatacctacaaaaaagtatgagataagaataacaaataattaaagagcagcagtaaataacaatagcgggactatatacagggggtaccggtagagtcaatgtgtcaatgtgcaggggcaccggtgttgaggtaattgaggtaaacatgtaggtagagttatttgTGATCGTTGTTCATTGAACAAACAATGAATAATGGGTTTGCTATGTTACCATTACAAAAGGTAGTGACTTGTACAAGAGTGGCCAGGGTGTTCCAGATCATTGAGTAACATGGGTAAGTTGGCTCTGTTTCTGGTCTCTGAGTCAGTCTGGGACTCTCCAGAAGATACAATGGCTATGTCCTCAGAGTGTAGTGGACAATCAGTACAGGAAGATAAGGGACTTAGCAGCCAATCTCTGTAAGTAATATTTGCGATGTCATTCAAGGAATATAATTTCCTCATGTTTAAGAATGttttgaatatatttttttttcagcaCAGGATTGTGCTTGGACAGGGCACTGGTGTCTCCAGGCCGTGTATCTAGACTAGAGGAACCCTTCTACCATGCCAACATAGTATCAAAGCACTGGATTGTGAATCACTGAAGGAATGAAGTATCGCTAGTTTAAAAATAAGCTTCTTTATGGAGCTGTTTGTATTTGTGTGGTTAATTCCATAAAACCATACCTGCAcatgtcaatgttcatatttaCAAAATCATACAGAAACAAATTATATTACAACATGAACAAAATAACCTTCCTTCAGCAGTTATTACAGCAATTTGGTTTTACACCTTAAAGACTTGTGCAGAGACAAATGACAGGAAATAAGTACTTAGAACACATGTGGACATCACATACAGTAGATGCCAGCTGGACAATTCCTTCCCCACAATTGTATGGTTTCACTCGGGAAAGCAATCTATTCATGAATGGCATATGTTCCATGGACACTGCTGAACTTAAATGTGTAGAAAAAGGGGAGTTATGCCTTCCAAACAAATAGCCATCCAAGAGCAATGCAGTTGACCGACTTTAATAGAAAAACTTTAAATAGCTCAGCTTTCTGTACATAGGCCTACTATTGGCACCCTCCTTCGACAGAGACTTGTAAGTAtatctgtgtgtgagtgactgagtACAGTTTTGTGCTTGGTTTCATCCCAGCAGAAGGCCTGACAGTGCATTCAGGTCCCTCATGTAGGGGTTGTCACTGAGGATACGGTCAATGCGCTGCTTCTGGTCGGGGAAGATATCGTACAGCTTCCTTTTGAGCTCTATGGTTTCCGAGGGTGACcgctggggagggggagagggtgttGGGCGAGGGGTGTTTGATCGCTgaagagggggtgaggggtgaggagggtgtGACCTCTGTGGAGGTGGTGAGGGTGTTGGGTGAGGGGGGTGCCACCCAGGGGGCCCAGAATGTGGCCAGTGGGAGAGTGGCCTCATCTGGGGGGTAGCTGTGGGGCGAGGGACAAATGAGGGGCGAGGTGCAGACTGCAGAGCTTGGACAAAGA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU31458 lncRNA downstream 998 27131682 ~ 27131929 (-) True G27478
TU31441 lncRNA downstream 12008 27120706 ~ 27120919 (-) True G27462
TU31392 lncRNA downstream 52865 27079861 ~ 27080062 (-) True G27414
TU31273 lncRNA downstream 156713 26975979 ~ 26976214 (-) True G27297
TU31270 lncRNA downstream 158982 26973746 ~ 26973945 (-) True G27294
TU31461 lncRNA upstream 2079 27137100 ~ 27137330 (-) True G27481
TU32052 lncRNA upstream 88466 27223487 ~ 27232530 (-) True G27969
TU32025 lncRNA upstream 91246 27226267 ~ 27229084 (-) False LOC110532124
TU32039 lncRNA upstream 108941 27243962 ~ 27263301 (-) True LOC110532124
TU32113 lncRNA upstream 216284 27351305 ~ 27351655 (-) True G28024
XM_021597071.2 mRNA downstream 193603 26935460 ~ 26939324 (-) True LOC110520062
XM_036974585.1 mRNA downstream 194184 26926298 ~ 26938743 (-) False LOC110520062
XM_036974576.1 mRNA downstream 194184 26935460 ~ 26938743 (-) False LOC110520062
XM_036974537.1 mRNA downstream 631436 25903959 ~ 26501491 (-) True LOC110520038
XM_036974544.1 mRNA downstream 830398 25903959 ~ 26302529 (-) False LOC110520038
XR_005053625.1 mRNA upstream 8339 27143360 ~ 27143413 (-) True LOC118966748
XM_021597149.2 mRNA upstream 70890 27205911 ~ 27215251 (-) False LOC110520098
XM_021597157.2 mRNA upstream 70890 27205911 ~ 27215251 (-) True LOC110520098
LOC110532124 mRNA upstream 91142 27226163 ~ 27299859 (-) False LOC110532124
LOC110532131 mRNA upstream 181651 27316672 ~ 27321126 (-) True LOC110532131
TU28962 other downstream 1850909 25281604 ~ 25282018 (-) True G25117
TU28960 other downstream 1851897 25280592 ~ 25281030 (-) True G25115
TU28762 other downstream 2181540 24944908 ~ 24951387 (-) False LOC110518671
TU28795 other downstream 2194226 24928348 ~ 24938701 (-) False LOC118956210
TU28721 other downstream 2268093 24864087 ~ 24864834 (-) True znf276
TU32221 other upstream 501067 27636088 ~ 27643120 (-) True LOC110520292
TU33047 other upstream 922422 28057443 ~ 28062450 (-) False G28870
TU33049 other upstream 922422 28057443 ~ 28066305 (-) True G28870
TU33578 other upstream 1568866 28703887 ~ 28704356 (-) True G29355
TU34164 other upstream 2145255 29280276 ~ 29280700 (-) True G29906

Expression Profile