RNA id: TCONS_00027313


Basic Information

Item Value
RNA id TCONS_00027313
length 951
lncRNA type inter_gene
GC content 0.39
exon number 2
gene id XLOC_013431
representative False

Chromosome Information

Item Value
chromosome id NC_007129.7
NCBI id CM002902.2
chromosome length 51023478
location 23686575 ~ 23833909 (-)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

TATGCCCCGTATACTCCAGAAGCACAAGTGTTTCCTTTGAGATAAGCAGAGAAGCGAACGCCTTGGGCAAGTGCCGAGCTGCAGGATGAGAAATGGTGCACCTGTGTGCTGTCTAAAGATAGGTTAGCAGTAGAGGGCCAGAGAGCAGACTCCAGAGGACCCATCCGTCTCAATCGAAGGCTGCAGCTGACACCTTACAAAGAGGTACAATTAATAAGGACATTATCCGTCGGCAGGCAACAATGGGGGCCTGACGCACAGACACTAACCCCTGGAGGTCTGGAGAGTAAGGGGAGGGATGGCAGGCCTGCAGGCCTTAAGAACAAGCCTCATTAGGAGCAATTTCTCCACAACATGAAATACTATCCCATAATAGAGCCATCTTTTCAAACCATTATCAGCTTCTCTGTTTGGATTGGGTCATTTTCAAGGATCAATCATGCGTTTGTCAGGGCTGCTGAAACATGTTTCTTGTTGGAAGGGAAAAAATGTCTATAGACAAAGGCCCCCCATTTCTTTTTTGTGATAAAATGTGCATCCTTGAATCATTTCTTTATTAAGTTCCCATTATGACACAAGGGTGAAAGCTGACAGATTGCACAATGTCGTCATTTTAAATCATTGTGCTTTGTGAGAAGTATTTATGGAAATGTATAtctttttaattgaattattttagcACTGTTTTAAAGACCAAAAGGCAAGAATTCAATTAATCACTTGTTTactattaatactaataaaagcacagattacaaaaaaagcaaataaaaagtaattttaataatgcaaaagAAAGTGAACTATTTGACTACAATTTCCACTGATTAAAGATGATGCCAGACAAACTTGCAGGGTTTAATCTCATGACacatgcaatatttaaaaataaaatgttttttactgcATCAGAAAGTGCACAACattcaataaacaaaacatatatttcAT

Function

GO:

id name namespace
GO:1990918 double-strand break repair involved in meiotic recombination biological_process
GO:0035278 miRNA mediated inhibition of translation biological_process
GO:0017148 negative regulation of translation biological_process
GO:0044260 cellular macromolecule metabolic process biological_process
GO:0040033 negative regulation of translation, ncRNA-mediated biological_process
GO:0045974 regulation of translation, ncRNA-mediated biological_process
GO:0044424 obsolete intracellular part cellular_component
GO:0016442 RISC complex cellular_component
GO:0031332 RNAi effector complex cellular_component
GO:0005622 intracellular anatomical structure cellular_component
GO:0043229 intracellular organelle cellular_component
GO:0061980 regulatory RNA binding molecular_function
GO:0035198 miRNA binding molecular_function

KEGG:

id description
ko03230 Viral genome structure
ko05164 Influenza A
ko03200 Viral proteins

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00026519 lncRNA downstream 222237 23563296 ~ 23608028 (-) True XLOC_013430
TCONS_00026968 lncRNA downstream 231623 23560054 ~ 23598642 (-) False XLOC_013430
TCONS_00027314 lncRNA upstream 44503 23877479 ~ 23884654 (-) False XLOC_013433
TCONS_00027315 lncRNA upstream 48833 23881809 ~ 23884610 (-) True XLOC_013433
TCONS_00027316 lncRNA upstream 100199 23933175 ~ 24023261 (-) True XLOC_013432
TCONS_00027317 lncRNA upstream 214510 24047486 ~ 24079244 (-) False XLOC_013434
TCONS_00027318 lncRNA upstream 214510 24047486 ~ 24083836 (-) True XLOC_013434
TCONS_00026514 mRNA downstream 1076628 22739732 ~ 22753637 (-) False XLOC_013426
TCONS_00026515 mRNA downstream 1076628 22746506 ~ 22753637 (-) True XLOC_013426
TCONS_00026512 mRNA downstream 1095263 22721551 ~ 22735002 (-) True XLOC_013425
TCONS_00026511 mRNA downstream 1112592 22716708 ~ 22717673 (-) True XLOC_013424
TCONS_00026510 mRNA downstream 1116863 22712683 ~ 22713402 (-) True XLOC_013423
TCONS_00026521 mRNA upstream 35674 23868650 ~ 23875370 (-) False XLOC_013432
TCONS_00026522 mRNA upstream 37426 23870402 ~ 23875219 (-) False XLOC_013432
TCONS_00026524 mRNA upstream 40479 23873455 ~ 23874929 (-) False XLOC_013432
TCONS_00026532 mRNA upstream 1100497 24933473 ~ 24989580 (-) False XLOC_013440
TCONS_00026533 mRNA upstream 1105716 24938692 ~ 24988661 (-) False XLOC_013440
TCONS_00026516 other downstream 967798 22859479 ~ 22862467 (-) True XLOC_013427
TCONS_00026513 other downstream 1086899 22739732 ~ 22743366 (-) False XLOC_013426
TCONS_00026504 other downstream 1278009 22550595 ~ 22552256 (-) False XLOC_013420
TCONS_00026501 other downstream 1746379 22083772 ~ 22083886 (-) True XLOC_013417
TCONS_00026485 other downstream 2110214 21712296 ~ 21720051 (-) True XLOC_013411
TCONS_00026523 other upstream 40368 23873344 ~ 24023013 (-) False XLOC_013432
TCONS_00026525 other upstream 440452 24273428 ~ 24476114 (-) False XLOC_013435
TCONS_00026526 other upstream 483205 24316181 ~ 24316299 (-) True XLOC_013436
TCONS_00026527 other upstream 555043 24388019 ~ 24476883 (-) False XLOC_013435
TCONS_00026529 other upstream 727211 24560187 ~ 24560397 (-) True XLOC_013437

Expression Profile

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