RNA id: TU33047


Basic Information

Item Value
RNA id TU33047
length 863
RNA type TUCP
GC content 0.35
exon number 2
gene id G28870
representative False

Chromosome Information

Item Value
chromosome id NC_048565.1
NCBI id CM023219.2
chromosome length 95772356
location 28057443 ~ 28066305 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

actgtgcatatgttttactgtgcatatgttttactgtgcatatgtttttgtgtttgtatgttttactgtgcatatgttttactgtgcatatgtttttgtgtttgtatgtttttgtgttcgtatgtttttgtgtttgtatgttttactgtgcatatgtttttgtgtttgtatgtttttgtgtttgcatgttttactgtgcatatgttttgtgtttgtgtgtttttgtgtttgtatgtttttgtgtttgtttgtttttgtgtttgtatgttttactgtgcatatgttttactgtgcatatgttttactgtgcatatgttttactgtgcatatgttttactgtgcatatgtttttgtgtttgtatgttttactgtgcatatgttttactgtgcatatgttttactgtgcatatgttttactgtgcatatgtttttgtgtttgtatgttttactgtgcatatgttttactgtgcatatgttttactgtgcatatgtttttgtgtttgtatgttttactgtgcatatgttttactgtgcatatgtttttgtgtttgtatgtttttgtgttcgtatgtttttgtgtttgtatgttttactgtgcatatgtttttgtgtttgtatgtttttgtgtttgtatgttttactgtgcatatgtttttgtgtttgtatgttttactgtgcatatgtttttgtgtttgtatgtttttgtgtttgtatgtttttgtgtttgtatgttttactgtgcatatgttttactgtgcatatgttttactgtgcatatgtttttgtgtttgtatgtttttgtgtttgtatgtttttgtgtttgtatgtttttgtgtttgtatgttttactgtgcatatgtttt

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU33035 lncRNA downstream 36784 28020203 ~ 28020659 (-) True G28858
TU32937 lncRNA downstream 181789 27875407 ~ 27875654 (-) True G28765
TU32936 lncRNA downstream 182414 27874719 ~ 27875029 (-) True G28764
TU32935 lncRNA downstream 184384 27872817 ~ 27873059 (-) True G28763
TU32921 lncRNA downstream 212237 27844640 ~ 27845206 (-) True G28749
TU33141 lncRNA upstream 275226 28337676 ~ 28338209 (-) True G28949
TU33252 lncRNA upstream 350993 28413443 ~ 28496850 (-) True G29045
TU33306 lncRNA upstream 436625 28499075 ~ 28499343 (-) True G29095
TU33572 lncRNA upstream 631466 28693916 ~ 28694324 (-) True G29349
TU33582 lncRNA upstream 648555 28711005 ~ 28711265 (-) True G29359
XM_021597599.2 mRNA downstream 23898 27984849 ~ 28033545 (-) False cfdp1
XM_036974966.1 mRNA downstream 23898 27984849 ~ 28033545 (-) False cfdp1
XM_036974976.1 mRNA downstream 23898 27984849 ~ 28033545 (-) True cfdp1
XM_036974957.1 mRNA downstream 78783 27850552 ~ 27978660 (-) True LOC110520323
XM_036974953.1 mRNA downstream 152951 27850552 ~ 27904492 (-) False LOC110520323
XM_021597712.2 mRNA upstream 36426 28098876 ~ 28104314 (-) False ctcf
XM_021597685.2 mRNA upstream 36426 28098876 ~ 28105788 (-) False ctcf
XM_021597694.2 mRNA upstream 36426 28098876 ~ 28105789 (-) False ctcf
XM_021597702.2 mRNA upstream 36426 28098876 ~ 28106014 (-) False ctcf
XM_036975023.1 mRNA upstream 36426 28098876 ~ 28106017 (-) True ctcf
TU32221 other downstream 414323 27636088 ~ 27643120 (-) True LOC110520292
TU28962 other downstream 2775425 25281604 ~ 25282018 (-) True G25117
TU28960 other downstream 2776413 25280592 ~ 25281030 (-) True G25115
TU28762 other downstream 3106056 24944908 ~ 24951387 (-) False LOC110518671
TU28795 other downstream 3118742 24928348 ~ 24938701 (-) False LOC118956210
TU33578 other upstream 641437 28703887 ~ 28704356 (-) True G29355
TU34164 other upstream 1217826 29280276 ~ 29280700 (-) True G29906
TU37184 other upstream 3069443 31131893 ~ 31132891 (-) True LOC110520932
TU37405 other upstream 3363673 31426123 ~ 31444949 (-) True LOC110521048
TU37804 other upstream 3922321 31984771 ~ 31986150 (-) False G33386

Expression Profile