Gene
RNA
| Item | Value |
|---|---|
| RNA id | TCONS_00026523 |
| length | 578 |
| RNA type | processed_transcript |
| GC content | 0.47 |
| exon number | 5 |
| gene id | XLOC_013432 |
| representative | False |
| Item | Value |
|---|---|
| chromosome id | NC_007129.7 |
| NCBI id | CM002902.2 |
| chromosome length | 51023478 |
| location | 23868650 ~ 24023261 (-) |
| genome version | GRCz11_2017_zebrafish_Genome |
| species | zebrafish (Danio rerio) |
| id | name | namespace |
|---|---|---|
| GO:0060852 | obsolete regulation of transcription involved in venous endothelial cell fate commitment | biological_process |
| GO:0006355 | regulation of transcription, DNA-templated | biological_process |
| GO:0006357 | regulation of transcription by RNA polymerase II | biological_process |
| GO:0030154 | cell differentiation | biological_process |
| GO:0055013 | cardiac muscle cell development | biological_process |
| GO:0000122 | negative regulation of transcription by RNA polymerase II | biological_process |
| GO:0048856 | anatomical structure development | biological_process |
| GO:1904888 | cranial skeletal system development | biological_process |
| GO:0001946 | lymphangiogenesis | biological_process |
| GO:0060838 | lymphatic endothelial cell fate commitment | biological_process |
| GO:0060841 | venous blood vessel development | biological_process |
| GO:0005634 | nucleus | cellular_component |
| GO:0001972 | retinoic acid binding | molecular_function |
| GO:0043565 | sequence-specific DNA binding | molecular_function |
| GO:0046872 | metal ion binding | molecular_function |
| GO:0003677 | DNA binding | molecular_function |
| GO:0004879 | nuclear receptor activity | molecular_function |
| GO:0003700 | DNA-binding transcription factor activity | molecular_function |
| GO:0000978 | RNA polymerase II cis-regulatory region sequence-specific DNA binding | molecular_function |
| GO:0003707 | steroid hormone receptor activity | molecular_function |
| GO:0008270 | zinc ion binding | molecular_function |
| id | description |
|---|---|
| ZDB-GENE-990415-252 | Predicted to enable RNA polymerase II cis-regulatory region sequence-specific DNA binding activity; nuclear receptor activity; and retinoic acid binding activity. Acts upstream of with a positive effect on venous endothelial cell fate commitment. Acts upstream of or within circulatory system development. Predicted to be located in nucleus. Is expressed in several structures, including brain; head; hindbrain neural keel; midbrain neural tube; and neural crest cell. Human ortholog(s) of this gene implicated in 46,XX sex reversal 5. Orthologous to human NR2F2 (nuclear receptor subfamily 2 group F member 2). |
| ensembl_id | ENSDART00000133361 |
| RNA id | RNA type | direction | distance | location | representative | gene id |
|---|---|---|---|---|---|---|
| TCONS_00026520 | lncRNA | downstream | 39435 | 23830265 ~ 23833909 (-) | True | XLOC_013431 |
| TCONS_00027312 | lncRNA | downstream | 39436 | 23686575 ~ 23833908 (-) | False | XLOC_013431 |
| TCONS_00027311 | lncRNA | downstream | 40334 | 23686575 ~ 23833010 (-) | False | XLOC_013431 |
| TCONS_00027313 | lncRNA | downstream | 40368 | 23830265 ~ 23832976 (-) | False | XLOC_013431 |
| TCONS_00026519 | lncRNA | downstream | 265316 | 23563296 ~ 23608028 (-) | True | XLOC_013430 |
| TCONS_00027317 | lncRNA | upstream | 24473 | 24047486 ~ 24079244 (-) | False | XLOC_013434 |
| TCONS_00027318 | lncRNA | upstream | 24473 | 24047486 ~ 24083836 (-) | True | XLOC_013434 |
| TCONS_00027319 | lncRNA | upstream | 318592 | 24341605 ~ 24476885 (-) | False | XLOC_013435 |
| TCONS_00027320 | lncRNA | upstream | 327557 | 24350570 ~ 24476885 (-) | False | XLOC_013435 |
| TCONS_00027321 | lncRNA | upstream | 327557 | 24350570 ~ 24476890 (-) | False | XLOC_013435 |
| TCONS_00026514 | mRNA | downstream | 1119707 | 22739732 ~ 22753637 (-) | False | XLOC_013426 |
| TCONS_00026515 | mRNA | downstream | 1119707 | 22746506 ~ 22753637 (-) | True | XLOC_013426 |
| TCONS_00026512 | mRNA | downstream | 1138342 | 22721551 ~ 22735002 (-) | True | XLOC_013425 |
| TCONS_00026511 | mRNA | downstream | 1155671 | 22716708 ~ 22717673 (-) | True | XLOC_013424 |
| TCONS_00026510 | mRNA | downstream | 1159942 | 22712683 ~ 22713402 (-) | True | XLOC_013423 |
| TCONS_00026532 | mRNA | upstream | 910460 | 24933473 ~ 24989580 (-) | False | XLOC_013440 |
| TCONS_00026533 | mRNA | upstream | 915679 | 24938692 ~ 24988661 (-) | False | XLOC_013440 |
| TCONS_00026534 | mRNA | upstream | 957871 | 24980884 ~ 24988645 (-) | True | XLOC_013440 |
| TCONS_00026538 | mRNA | upstream | 973006 | 24996019 ~ 24996634 (-) | True | XLOC_013441 |
| TCONS_00026539 | mRNA | upstream | 1004482 | 25027495 ~ 25051846 (-) | True | XLOC_013442 |
| TCONS_00026516 | other | downstream | 1010877 | 22859479 ~ 22862467 (-) | True | XLOC_013427 |
| TCONS_00026513 | other | downstream | 1129978 | 22739732 ~ 22743366 (-) | False | XLOC_013426 |
| TCONS_00026504 | other | downstream | 1321088 | 22550595 ~ 22552256 (-) | False | XLOC_013420 |
| TCONS_00026501 | other | downstream | 1789458 | 22083772 ~ 22083886 (-) | True | XLOC_013417 |
| TCONS_00026485 | other | downstream | 2153293 | 21712296 ~ 21720051 (-) | True | XLOC_013411 |
| TCONS_00026525 | other | upstream | 250415 | 24273428 ~ 24476114 (-) | False | XLOC_013435 |
| TCONS_00026526 | other | upstream | 293168 | 24316181 ~ 24316299 (-) | True | XLOC_013436 |
| TCONS_00026527 | other | upstream | 365006 | 24388019 ~ 24476883 (-) | False | XLOC_013435 |
| TCONS_00026529 | other | upstream | 537174 | 24560187 ~ 24560397 (-) | True | XLOC_013437 |
| TCONS_00026536 | other | upstream | 967255 | 24990268 ~ 24996647 (-) | False | XLOC_013441 |
