RNA id: TU33141


Basic Information

Item Value
RNA id TU33141
length 534
lncRNA type read_through
GC content 0.44
exon number 1
gene id G28949
representative True

Chromosome Information

Item Value
chromosome id NC_048565.1
NCBI id CM023219.2
chromosome length 95772356
location 28337676 ~ 28338209 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

TACTATAAACAGACGTTTGAATTGAGTAGCCACACTGCTCCGGTGAACAATTTGCTAGCCTGGTTACTAGAACATCAGAGAAGTATGTGACAGCTCATCTTTGGGATGCTAATGTTTTTACGTAAATATTCCATTTCTGACACCGATAATAAATTACTGTGTGAAACACATTTGACTTACAGATAATTTCAGTAACAACGGTTCGTTTAAGTGTTTGTTTAATGTTCAACCTGGTTCCTTTGGAAATATTTCATGAGTTTGCAGGCCACAATGATAGCAAAGAAACAGTTCGATGCCTGACTGGCTACCACTTTCTAAAAGTGCTTAGAGCGATTCAGTCCTGTTGTGGTGCAGGCCCAGCCCTGGTCACATCTATTGCCAGGAGGTGCTGCAGGGCCAGCTCTGTGTCCAtttgtgttgtgtgctgctctaGCTCCTCCTGGTGTATCTGAAATGCCATAGTTAGGACCCAGTCTAGTGTGGTAGCGTCCAGAGAGGGGTCAATGTTCTTAAAGGCAGCCCTTAGATCAGCCA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU33035 lncRNA downstream 317017 28020203 ~ 28020659 (-) True G28858
TU32937 lncRNA downstream 462022 27875407 ~ 27875654 (-) True G28765
TU32936 lncRNA downstream 462647 27874719 ~ 27875029 (-) True G28764
TU32935 lncRNA downstream 464617 27872817 ~ 27873059 (-) True G28763
TU32921 lncRNA downstream 492470 27844640 ~ 27845206 (-) True G28749
TU33252 lncRNA upstream 75234 28413443 ~ 28496850 (-) True G29045
TU33306 lncRNA upstream 160866 28499075 ~ 28499343 (-) True G29095
TU33572 lncRNA upstream 355707 28693916 ~ 28694324 (-) True G29349
TU33582 lncRNA upstream 372796 28711005 ~ 28711265 (-) True G29359
TU33588 lncRNA upstream 380033 28718242 ~ 28718493 (-) True G29365
XM_021597763.2 mRNA downstream 7042 28294448 ~ 28330634 (-) False ranbp10
XM_021597772.2 mRNA downstream 7045 28294448 ~ 28330631 (-) False ranbp10
XM_021597781.2 mRNA downstream 7047 28294448 ~ 28330629 (-) False ranbp10
XM_021597790.2 mRNA downstream 7050 28294448 ~ 28330626 (-) False ranbp10
XM_021597796.2 mRNA downstream 12082 28294448 ~ 28325594 (-) False ranbp10
XM_036975172.1 mRNA upstream 196948 28535157 ~ 28661448 (-) False necab2
XM_036975159.1 mRNA upstream 196948 28535157 ~ 28661451 (-) False necab2
XM_036975166.1 mRNA upstream 196948 28535157 ~ 28661453 (-) True necab2
XM_021597913.2 mRNA upstream 325330 28663539 ~ 28737301 (-) False hydin
XM_021597922.2 mRNA upstream 325330 28663539 ~ 28737301 (-) False hydin
TU33049 other downstream 271371 28057443 ~ 28066305 (-) True G28870
TU33047 other downstream 275226 28057443 ~ 28062450 (-) False G28870
TU32221 other downstream 694556 27636088 ~ 27643120 (-) True LOC110520292
TU28962 other downstream 3055658 25281604 ~ 25282018 (-) True G25117
TU28960 other downstream 3056646 25280592 ~ 25281030 (-) True G25115
TU33578 other upstream 365678 28703887 ~ 28704356 (-) True G29355
TU34164 other upstream 942067 29280276 ~ 29280700 (-) True G29906
TU37184 other upstream 2793684 31131893 ~ 31132891 (-) True LOC110520932
TU37405 other upstream 3087914 31426123 ~ 31444949 (-) True LOC110521048
TU37804 other upstream 3646562 31984771 ~ 31986150 (-) False G33386

Expression Profile