RNA id: TCONS_00026524


Basic Information

Item Value
RNA id TCONS_00026524
length 419
RNA type mRNA
GC content 0.54
exon number 2
gene id XLOC_013432
representative False

Chromosome Information

Item Value
chromosome id NC_007129.7
NCBI id CM002902.2
chromosome length 51023478
location 23868650 ~ 24023261 (-)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

TGACGGCCTCTCAGGTTGCCCCTCCGACCCCTCAGACACCCGTTCAAGGACCCccgaacaacaataacaacacacAGTCAACCCCGACGAACCAGACGACGCAGAGCCAGTCGGAAAAGCAGCAGCCACAGCATATAGAGTGCGTGGTTTGCGGGGACAAATCCAGCGGTAAACACTATGGCCAGTTCACTTGCGAGGGGTGCAAAAGCTTTTTCAAACGGAGCGTACGAAGGAACCTCACTTACACATGCCGTGCCAACAGGAATTGTCCCATTGACCAGCACCATCGCAATCAGTGTCAGTACTGCCGCCTCAAAAAATGCCTCAAAGTTGGCATGAGACGGGAAGTTTCTCTTTTTACTGCAGCCGTGCAAAGGGGACGAATGCCACCCACACAGCCACACCATGGTCAGTTCGCC

Function

GO:

id name namespace
GO:0060852 obsolete regulation of transcription involved in venous endothelial cell fate commitment biological_process
GO:0006355 regulation of transcription, DNA-templated biological_process
GO:0006357 regulation of transcription by RNA polymerase II biological_process
GO:0030154 cell differentiation biological_process
GO:0055013 cardiac muscle cell development biological_process
GO:0000122 negative regulation of transcription by RNA polymerase II biological_process
GO:0048856 anatomical structure development biological_process
GO:1904888 cranial skeletal system development biological_process
GO:0001946 lymphangiogenesis biological_process
GO:0060838 lymphatic endothelial cell fate commitment biological_process
GO:0060841 venous blood vessel development biological_process
GO:0005634 nucleus cellular_component
GO:0001972 retinoic acid binding molecular_function
GO:0043565 sequence-specific DNA binding molecular_function
GO:0046872 metal ion binding molecular_function
GO:0003677 DNA binding molecular_function
GO:0004879 nuclear receptor activity molecular_function
GO:0003700 DNA-binding transcription factor activity molecular_function
GO:0000978 RNA polymerase II cis-regulatory region sequence-specific DNA binding molecular_function
GO:0003707 steroid hormone receptor activity molecular_function
GO:0008270 zinc ion binding molecular_function

KEGG:

id description
ko03000 Transcription factors
ko03310 Nuclear receptors

ZFIN:

id description
ZDB-GENE-990415-252 Predicted to enable RNA polymerase II cis-regulatory region sequence-specific DNA binding activity; nuclear receptor activity; and retinoic acid binding activity. Acts upstream of with a positive effect on venous endothelial cell fate commitment. Acts upstream of or within circulatory system development. Predicted to be located in nucleus. Is expressed in several structures, including brain; head; hindbrain neural keel; midbrain neural tube; and neural crest cell. Human ortholog(s) of this gene implicated in 46,XX sex reversal 5. Orthologous to human NR2F2 (nuclear receptor subfamily 2 group F member 2).

Ensembl:

ensembl_id ENSDART00000134910

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00026520 lncRNA downstream 39546 23830265 ~ 23833909 (-) True XLOC_013431
TCONS_00027312 lncRNA downstream 39547 23686575 ~ 23833908 (-) False XLOC_013431
TCONS_00027311 lncRNA downstream 40445 23686575 ~ 23833010 (-) False XLOC_013431
TCONS_00027313 lncRNA downstream 40479 23830265 ~ 23832976 (-) False XLOC_013431
TCONS_00026519 lncRNA downstream 265427 23563296 ~ 23608028 (-) True XLOC_013430
TCONS_00027314 lncRNA upstream 2550 23877479 ~ 23884654 (-) False XLOC_013433
TCONS_00027315 lncRNA upstream 6880 23881809 ~ 23884610 (-) True XLOC_013433
TCONS_00027316 lncRNA upstream 58246 23933175 ~ 24023261 (-) True XLOC_013432
TCONS_00027317 lncRNA upstream 172557 24047486 ~ 24079244 (-) False XLOC_013434
TCONS_00027318 lncRNA upstream 172557 24047486 ~ 24083836 (-) True XLOC_013434
TCONS_00026514 mRNA downstream 1119818 22739732 ~ 22753637 (-) False XLOC_013426
TCONS_00026515 mRNA downstream 1119818 22746506 ~ 22753637 (-) True XLOC_013426
TCONS_00026512 mRNA downstream 1138453 22721551 ~ 22735002 (-) True XLOC_013425
TCONS_00026511 mRNA downstream 1155782 22716708 ~ 22717673 (-) True XLOC_013424
TCONS_00026510 mRNA downstream 1160053 22712683 ~ 22713402 (-) True XLOC_013423
TCONS_00026532 mRNA upstream 1058544 24933473 ~ 24989580 (-) False XLOC_013440
TCONS_00026533 mRNA upstream 1063763 24938692 ~ 24988661 (-) False XLOC_013440
TCONS_00026534 mRNA upstream 1105955 24980884 ~ 24988645 (-) True XLOC_013440
TCONS_00026538 mRNA upstream 1121090 24996019 ~ 24996634 (-) True XLOC_013441
TCONS_00026539 mRNA upstream 1152566 25027495 ~ 25051846 (-) True XLOC_013442
TCONS_00026516 other downstream 1010988 22859479 ~ 22862467 (-) True XLOC_013427
TCONS_00026513 other downstream 1130089 22739732 ~ 22743366 (-) False XLOC_013426
TCONS_00026504 other downstream 1321199 22550595 ~ 22552256 (-) False XLOC_013420
TCONS_00026501 other downstream 1789569 22083772 ~ 22083886 (-) True XLOC_013417
TCONS_00026485 other downstream 2153404 21712296 ~ 21720051 (-) True XLOC_013411
TCONS_00026525 other upstream 398499 24273428 ~ 24476114 (-) False XLOC_013435
TCONS_00026526 other upstream 441252 24316181 ~ 24316299 (-) True XLOC_013436
TCONS_00026527 other upstream 513090 24388019 ~ 24476883 (-) False XLOC_013435
TCONS_00026529 other upstream 685258 24560187 ~ 24560397 (-) True XLOC_013437
TCONS_00026536 other upstream 1115339 24990268 ~ 24996647 (-) False XLOC_013441

Expression Profile

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