RNA id: TU33306


Basic Information

Item Value
RNA id TU33306
length 269
lncRNA type inter_gene
GC content 0.34
exon number 1
gene id G29095
representative True

Chromosome Information

Item Value
chromosome id NC_048565.1
NCBI id CM023219.2
chromosome length 95772356
location 28499075 ~ 28499343 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

GTACTTGTCTTATACTATCttcaatgtatcgtccatgtaaaaaaaaatgcctgattaggatgaataatatccgaCAATACTGTACCTTTTTAATTCCATGCGCTATGCATTTTGCCAGAttttttttgcatcacaacactgaaggtACAGTATTGtcggatattattcatcctaatcaggcagtttttttttacatggacgatacattgaaGATAGTATAAGACAAGacctggaaacaatagaacactatgaaaaatccaggaaaccag

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU33252 lncRNA downstream 2225 28413443 ~ 28496850 (-) True G29045
TU33141 lncRNA downstream 160866 28337676 ~ 28338209 (-) True G28949
TU33035 lncRNA downstream 478416 28020203 ~ 28020659 (-) True G28858
TU32937 lncRNA downstream 623421 27875407 ~ 27875654 (-) True G28765
TU32936 lncRNA downstream 624046 27874719 ~ 27875029 (-) True G28764
TU33572 lncRNA upstream 194573 28693916 ~ 28694324 (-) True G29349
TU33582 lncRNA upstream 211662 28711005 ~ 28711265 (-) True G29359
TU33588 lncRNA upstream 218899 28718242 ~ 28718493 (-) True G29365
TU33592 lncRNA upstream 228067 28727410 ~ 28731732 (-) True G29369
TU33626 lncRNA upstream 248969 28748312 ~ 28749506 (-) True G29384
XM_021597802.2 mRNA downstream 160552 28294448 ~ 28338523 (-) True ranbp10
XM_021597763.2 mRNA downstream 168441 28294448 ~ 28330634 (-) False ranbp10
XM_021597772.2 mRNA downstream 168444 28294448 ~ 28330631 (-) False ranbp10
XM_021597781.2 mRNA downstream 168446 28294448 ~ 28330629 (-) False ranbp10
XM_021597790.2 mRNA downstream 168449 28294448 ~ 28330626 (-) False ranbp10
XM_036975172.1 mRNA upstream 35814 28535157 ~ 28661448 (-) False necab2
XM_036975159.1 mRNA upstream 35814 28535157 ~ 28661451 (-) False necab2
XM_036975166.1 mRNA upstream 35814 28535157 ~ 28661453 (-) True necab2
XM_021597913.2 mRNA upstream 164196 28663539 ~ 28737301 (-) False hydin
XM_021597922.2 mRNA upstream 164196 28663539 ~ 28737301 (-) False hydin
TU33049 other downstream 432770 28057443 ~ 28066305 (-) True G28870
TU33047 other downstream 436625 28057443 ~ 28062450 (-) False G28870
TU32221 other downstream 855955 27636088 ~ 27643120 (-) True LOC110520292
TU28962 other downstream 3217057 25281604 ~ 25282018 (-) True G25117
TU28960 other downstream 3218045 25280592 ~ 25281030 (-) True G25115
TU33578 other upstream 204544 28703887 ~ 28704356 (-) True G29355
TU34164 other upstream 780933 29280276 ~ 29280700 (-) True G29906
TU37184 other upstream 2632550 31131893 ~ 31132891 (-) True LOC110520932
TU37405 other upstream 2926780 31426123 ~ 31444949 (-) True LOC110521048
TU37804 other upstream 3485428 31984771 ~ 31986150 (-) False G33386

Expression Profile