RNA id: TU33578


Basic Information

Item Value
RNA id TU33578
length 470
RNA type TUCP
GC content 0.43
exon number 1
gene id G29355
representative True

Chromosome Information

Item Value
chromosome id NC_048565.1
NCBI id CM023219.2
chromosome length 95772356
location 28703887 ~ 28704356 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

gtcagatgaaaccaaaattgaactttttggcaacaatgcaaaacgttatgtttggcgtaaaagcaacacagctgaacacaccatccccactgtcaagcatggtggtggcagcatcatggtttgggcctgcttttcttcagcagggacagggaagatggttaaaatttatgggaagatggatggagccaaatacaggaccattctggaagaaaacctgagggagtctgcaaaagacctgagactgggacggagatttgtcttccaacaagacaatgatccaaaacatatagcaaaatctacaatggaatggttcaaaaataaacatatccaggtgttagaatggccaagtcaaagtccagacctgaatccaatcgagaatctgtggaaagaactgaaaactgctgttcacaaatgctctccatccaacctcactgagctcgagctgttttgcaaggaggaatgggaaaaaa

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU33572 lncRNA downstream 9563 28693916 ~ 28694324 (-) True G29349
TU33306 lncRNA downstream 204544 28499075 ~ 28499343 (-) True G29095
TU33252 lncRNA downstream 207037 28413443 ~ 28496850 (-) True G29045
TU33141 lncRNA downstream 365678 28337676 ~ 28338209 (-) True G28949
TU33035 lncRNA downstream 683228 28020203 ~ 28020659 (-) True G28858
TU33582 lncRNA upstream 6649 28711005 ~ 28711265 (-) True G29359
TU33588 lncRNA upstream 13886 28718242 ~ 28718493 (-) True G29365
TU33592 lncRNA upstream 23054 28727410 ~ 28731732 (-) True G29369
TU33626 lncRNA upstream 43956 28748312 ~ 28749506 (-) True G29384
TU33620 lncRNA upstream 45621 28749977 ~ 28763663 (-) True G29378
XM_036975166.1 mRNA downstream 42434 28535157 ~ 28661453 (-) True necab2
XM_036975159.1 mRNA downstream 42436 28535157 ~ 28661451 (-) False necab2
XM_036975172.1 mRNA downstream 42439 28535157 ~ 28661448 (-) False necab2
XM_021597802.2 mRNA downstream 365364 28294448 ~ 28338523 (-) True ranbp10
XM_021597763.2 mRNA downstream 373253 28294448 ~ 28330634 (-) False ranbp10
XM_021597978.2 mRNA upstream 89810 28794166 ~ 28830946 (-) False LOC110520584
XM_021597987.2 mRNA upstream 89810 28794166 ~ 28830947 (-) True LOC110520584
XM_021598007.2 mRNA upstream 130922 28835278 ~ 28841685 (-) False LOC110520608
XM_036975304.1 mRNA upstream 130922 28835278 ~ 28841690 (-) False LOC110520608
XM_021598056.2 mRNA upstream 130922 28835278 ~ 28841692 (-) False LOC110520608
TU33049 other downstream 637582 28057443 ~ 28066305 (-) True G28870
TU33047 other downstream 641437 28057443 ~ 28062450 (-) False G28870
TU32221 other downstream 1060767 27636088 ~ 27643120 (-) True LOC110520292
TU28962 other downstream 3421869 25281604 ~ 25282018 (-) True G25117
TU28960 other downstream 3422857 25280592 ~ 25281030 (-) True G25115
TU34164 other upstream 575920 29280276 ~ 29280700 (-) True G29906
TU37184 other upstream 2427537 31131893 ~ 31132891 (-) True LOC110520932
TU37405 other upstream 2721767 31426123 ~ 31444949 (-) True LOC110521048
TU37804 other upstream 3280415 31984771 ~ 31986150 (-) False G33386
TU39673 other upstream 4402763 33107119 ~ 33108497 (-) True G35075

Expression Profile