RNA id: TCONS_00027314


Basic Information

Item Value
RNA id TCONS_00027314
length 903
lncRNA type inter_gene
GC content 0.42
exon number 2
gene id XLOC_013433
representative False

Chromosome Information

Item Value
chromosome id NC_007129.7
NCBI id CM002902.2
chromosome length 51023478
location 23877479 ~ 23884654 (-)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

TTGAGGAGCAGTTTATTTACTTTTGGCAGAAAAGTTACTGtacagcatttttgtttttaaattcaacaTTTCTAGTCTTGTCATCTTAAAGCTATTGCCATTATCATGTATAATCACACATTACAGCAAACGGTGCAGAATTACTATACATACGTAGACGATTCAAGCAGTTTGTTATCAGCTGACCCTTTGATCCTGTTGCCTGTAAGAGAATCTATTACAGGTTAGTTGCTCCAGTAACTCAAACACATACATTAAGGCTTACCTTCCCTGCATTGTGGGACGTTTGCATGATGTTCCTCCTCCCGTCATGCATTAGGTGTTGATGTCAGCACTCAGCattctccagtcttcagagtcctGCAGAGAGCTCCGACACAATGCAATGGTAGTCTGCCAGCCAGACCGCCGATTTTACCTTGGTCTTGGGGTAAAATCCACTTTGCATTGGTTCGATATAATTTACTTCTGCTGGATTGCTTTCGGCTGTGTTGTTCACTGGCTTTTGAATGGTCGGTGATGAGGCACGGTGTTCAGTTTTGATCGTTTCAATAAACtgagcaaaattaaccgaaacgCTGTAATATTCCCGTGCGTGAAAAAACACTCCGGAGAAAATGTGTAGCGTAGACCTACAAACGCACCTCTGCAACGTCCAAGTCAATTAGAAGGAAATCTCAAAAGCATTAATCAGATTAAAATAGGCGCATGTTACTTTGGTGTATGTGAGAGGCGAGCGACCGATGTAGTTTCCATTTAAGATGGCTCTTCCACCTTAAAGAGCGATTCCAGGCAGAAATAATCCAAACGCTAGGAGGCGCCCATATACTGCTGTACGTCCAGTCTCTTCTGCATTTTTCCTCCGAGGCAGCATATGCTGTGATTTAGCACTGTACATTTTTC

Function

GO: NA

KEGG:

id description
ko03230 Viral genome structure
ko05164 Influenza A
ko03200 Viral proteins

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00026520 lncRNA downstream 43570 23830265 ~ 23833909 (-) True XLOC_013431
TCONS_00027312 lncRNA downstream 43571 23686575 ~ 23833908 (-) False XLOC_013431
TCONS_00027311 lncRNA downstream 44469 23686575 ~ 23833010 (-) False XLOC_013431
TCONS_00027313 lncRNA downstream 44503 23830265 ~ 23832976 (-) False XLOC_013431
TCONS_00026519 lncRNA downstream 269451 23563296 ~ 23608028 (-) True XLOC_013430
TCONS_00027316 lncRNA upstream 48521 23933175 ~ 24023261 (-) True XLOC_013432
TCONS_00027317 lncRNA upstream 162832 24047486 ~ 24079244 (-) False XLOC_013434
TCONS_00027318 lncRNA upstream 162832 24047486 ~ 24083836 (-) True XLOC_013434
TCONS_00027319 lncRNA upstream 456951 24341605 ~ 24476885 (-) False XLOC_013435
TCONS_00027320 lncRNA upstream 465916 24350570 ~ 24476885 (-) False XLOC_013435
TCONS_00026521 mRNA downstream 2109 23868650 ~ 23875370 (-) False XLOC_013432
TCONS_00026522 mRNA downstream 2260 23870402 ~ 23875219 (-) False XLOC_013432
TCONS_00026524 mRNA downstream 2550 23873455 ~ 23874929 (-) False XLOC_013432
TCONS_00026514 mRNA downstream 1123842 22739732 ~ 22753637 (-) False XLOC_013426
TCONS_00026515 mRNA downstream 1123842 22746506 ~ 22753637 (-) True XLOC_013426
TCONS_00026532 mRNA upstream 1048819 24933473 ~ 24989580 (-) False XLOC_013440
TCONS_00026533 mRNA upstream 1054038 24938692 ~ 24988661 (-) False XLOC_013440
TCONS_00026534 mRNA upstream 1096230 24980884 ~ 24988645 (-) True XLOC_013440
TCONS_00026538 mRNA upstream 1111365 24996019 ~ 24996634 (-) True XLOC_013441
TCONS_00026539 mRNA upstream 1142841 25027495 ~ 25051846 (-) True XLOC_013442
TCONS_00026516 other downstream 1015012 22859479 ~ 22862467 (-) True XLOC_013427
TCONS_00026513 other downstream 1134113 22739732 ~ 22743366 (-) False XLOC_013426
TCONS_00026504 other downstream 1325223 22550595 ~ 22552256 (-) False XLOC_013420
TCONS_00026501 other downstream 1793593 22083772 ~ 22083886 (-) True XLOC_013417
TCONS_00026485 other downstream 2157428 21712296 ~ 21720051 (-) True XLOC_013411
TCONS_00026525 other upstream 388774 24273428 ~ 24476114 (-) False XLOC_013435
TCONS_00026526 other upstream 431527 24316181 ~ 24316299 (-) True XLOC_013436
TCONS_00026527 other upstream 503365 24388019 ~ 24476883 (-) False XLOC_013435
TCONS_00026529 other upstream 675533 24560187 ~ 24560397 (-) True XLOC_013437
TCONS_00026536 other upstream 1105614 24990268 ~ 24996647 (-) False XLOC_013441

Expression Profile

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