RNA id: TU33623


Basic Information

Item Value
RNA id TU33623
length 1246
lncRNA type inter_gene
GC content 0.52
exon number 1
gene id G29381
representative True

Chromosome Information

Item Value
chromosome id NC_048565.1
NCBI id CM023219.2
chromosome length 95772356
location 28764298 ~ 28765543 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

gaaaacttgattgctgatgTGCAAAACactttgggactgtatcaacagtggactagaGAAACAGATACAAAAATATACAGTCGTTTTTGAGTGGAATTTTCCTTAATGAAAGCAGTTGATACAATTACTTAAACAGCTTTACCTCATGATTGGTAGAAGCTATTCCCTTTCTGATTTCAGATTTGAAAAACAGAGAATTAGAGGAAGTTTTCatatgctctgcttttttgtCTAATTTGTTGGAACCTCGGTTACCGAAACACATGTACGTTTGATTGGTAGAATATAATTATTTCCTAATTTCAGTTTTGAATATCAGAAAAGCAGACTTAGATATTTCATGTGCTATGTTTTTTTCAAATTTGTTGGGAAAGTGGCCTGAGTAGCTGATTGTGTCAAAAGCGACATTGTTTACGCTGAATAGAATACGTCTTTATCAATAAAACGTCACAATAAGGTGCAGAGCGTTCAATTTTCCTGCTGGGGGGCAAGGAGACCCCCGGCTCCGgaattgttaaataaatgttaactaTTTGGCTGTAATGTCATCACCTCTTGAAGAGCATagtcagaactacacatttcCGATGATTCCATGCAAAACAATTACGCACATtttagctctatcatcagagttatacagcaagtaactgcATCCTTTTCATGGTCAGTGTTAGCTGATGTTTAATTTGCAAGCTATCGTACTGATATAAATGTTGTACAGTTGTCTACATAGTGTGTAAGTGGACCTAATGTAGTTTTTTTTCTCCAACCAACATAGTCCTACCTAGCGAAGTTAGCTAACGTTATCCCCttttcaacattgtttttaagaatgttaaatcaCGATTGCTGCTGACACATGATAGGCTACATTGACTGATGGACAACGTCaaattggttagctagctaataacacATCACGTCAATATGGCTAGTTAACGAGCTAACTTTCAGGGGATAAACTAGATGGCTATATCCAAATATTGTTTGATTTGCTTGCCATCTATAGGGGTGATGACAGTAGTCCAACTGACAACTTTACCACGACGAGGATTTACCGATCTAAAGCTCGTTCCAAAAGCCTAATTTCTGATGAAGCAAGGCTAAATGACACGTTGTttccttagctagctagccagctagctacttgCCAAATGGATAGGCTACCCTCATGTATCTGAACATACATGATCgattgatgtttactgatcatgaaaaaCATGCAGTTACTTTctatataact

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU33620 lncRNA downstream 635 28749977 ~ 28763663 (-) True G29378
TU33626 lncRNA downstream 14792 28748312 ~ 28749506 (-) True G29384
TU33592 lncRNA downstream 32566 28727410 ~ 28731732 (-) True G29369
TU33588 lncRNA downstream 45805 28718242 ~ 28718493 (-) True G29365
TU33582 lncRNA downstream 53033 28711005 ~ 28711265 (-) True G29359
TU33622 lncRNA upstream 105 28765648 ~ 28766980 (-) True G29380
TU33637 lncRNA upstream 65726 28831269 ~ 28831491 (-) True G29395
TU33614 lncRNA upstream 68026 28833569 ~ 28833765 (-) False G29376
TU33613 lncRNA upstream 68127 28833670 ~ 28834943 (-) True G29376
TU33651 lncRNA upstream 96714 28862257 ~ 28862761 (-) True G29409
XM_036975199.1 mRNA downstream 26990 28669810 ~ 28737308 (-) True hydin
XM_021597913.2 mRNA downstream 26997 28663539 ~ 28737301 (-) False hydin
XM_021597922.2 mRNA downstream 26997 28663539 ~ 28737301 (-) False hydin
XM_036975166.1 mRNA downstream 102845 28535157 ~ 28661453 (-) True necab2
XM_036975159.1 mRNA downstream 102847 28535157 ~ 28661451 (-) False necab2
XM_021597978.2 mRNA upstream 28623 28794166 ~ 28830946 (-) False LOC110520584
XM_021597987.2 mRNA upstream 28623 28794166 ~ 28830947 (-) True LOC110520584
XM_021598007.2 mRNA upstream 69735 28835278 ~ 28841685 (-) False LOC110520608
XM_036975304.1 mRNA upstream 69735 28835278 ~ 28841690 (-) False LOC110520608
XM_021598056.2 mRNA upstream 69735 28835278 ~ 28841692 (-) False LOC110520608
TU33578 other downstream 59942 28703887 ~ 28704356 (-) True G29355
TU33049 other downstream 697993 28057443 ~ 28066305 (-) True G28870
TU33047 other downstream 701848 28057443 ~ 28062450 (-) False G28870
TU32221 other downstream 1121178 27636088 ~ 27643120 (-) True LOC110520292
TU28962 other downstream 3482280 25281604 ~ 25282018 (-) True G25117
TU34164 other upstream 514733 29280276 ~ 29280700 (-) True G29906
TU37184 other upstream 2366350 31131893 ~ 31132891 (-) True LOC110520932
TU37405 other upstream 2660580 31426123 ~ 31444949 (-) True LOC110521048
TU37804 other upstream 3219228 31984771 ~ 31986150 (-) False G33386
TU39673 other upstream 4341576 33107119 ~ 33108497 (-) True G35075

Expression Profile