RNA id: TU33622


Basic Information

Item Value
RNA id TU33622
length 1333
lncRNA type inter_gene
GC content 0.40
exon number 1
gene id G29380
representative True

Chromosome Information

Item Value
chromosome id NC_048565.1
NCBI id CM023219.2
chromosome length 95772356
location 28765648 ~ 28766980 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

TCACATCCTCATTATAACAGTATCAGCCAGAAAACGCAAcataaaaaatctaaatgtaacagGGTAATAATATAAGGATGAAATACCAGATATATACATAGATGAACTAGATGGTAATTTTCCATGAAGAAAACTTGTGGGACTTGCTTTAACTCTTTAAAAGTATTTTTGTGGTAGTGGAAGAAgtttaaaacattttaattaaGCTAATCAGTTAAATATAGTCAAAGCTAAATGTAGTAAAATAATTGGTCTGCTTACTTTGATATACTACTTTATCAACCTTATTACCTTGGATTGTGGGGCAGTTAGAGCACACATTTCATCAGAAATAACTACATCCAGACTAAACTTTTATACACTCTCCTACTTGAATATCACAGTATATGACAACTGTAATAACAGATTACAGAAGATAATGAGGCATTGATGAAGTTTTAAATAAAACATAACTGTATTTTTTCACAACATATTTGGACGACAGCAGGATATTCATTAAATCCTCTCTGGGCTGGAGGAGGATAAATGGGAAGAGGGACCCACCGGCCAGAAAGGGGGAACCCCTTCCTTCAGAGCCCCTCTGCGCCCAGGGGGGGACACAAGTTAACTGAGCATAGCATACATCTGATAATCATTATTTGAAATGCAATTGTAGTTTCGTTTTTTTTACCATGAGCATGTAGACAGTTAAAAATGTATTTCGCTTTCACAACGTATTTTGACTTTTGCTTTTTTACACTAACATGAAGGAAGAACTAATGCGATACCAATGTTTTGGTCAAGATTCATACCTGAGAGATGTCTGAAGTGAAAATGCAGTACACATGGTTGTGTTAGCTGTAGTACGTCTGCAGCACACCTGAATGGAGGCAATGTTGTGGATGAGAAATGAACACTGGATTTTCAGCCTGGTATTCTTTTCTGTGGTAGCAGCTTGTATCAACCGTGCGTACCACCGTGCCCCTCTATCATGAAACAATGTCAAGATGGGCTTGCTTGACCTGGATAGCAGATCCTTGTTGAAGTTGCCACAGACGATGATCGGTTCAGTGCCTTTAAACTATGACAATggaaggagtgtgtgtgcgtactGGTTTTAATGTGTTTATTACTTCTTACCTGTAGAAAATGATAATTTTGGCACTTCAAACAGACTAAGTAAGCAGGGGTATTAATGCTCAGTGAGATCATATGTTGCTGTGGTAACCAGGGAGCTTTCAATAACAAAGTTACATGACAGTGGGAAGTTAGATGAAAGGAAAATACaactcaaaaatatattttagtatttgtttcattagtccactgttgatagtctaatttgttttgcatg

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU33623 lncRNA downstream 105 28764298 ~ 28765543 (-) True G29381
TU33620 lncRNA downstream 1985 28749977 ~ 28763663 (-) True G29378
TU33626 lncRNA downstream 16142 28748312 ~ 28749506 (-) True G29384
TU33592 lncRNA downstream 33916 28727410 ~ 28731732 (-) True G29369
TU33588 lncRNA downstream 47155 28718242 ~ 28718493 (-) True G29365
TU33637 lncRNA upstream 64289 28831269 ~ 28831491 (-) True G29395
TU33614 lncRNA upstream 66589 28833569 ~ 28833765 (-) False G29376
TU33613 lncRNA upstream 66690 28833670 ~ 28834943 (-) True G29376
TU33651 lncRNA upstream 95277 28862257 ~ 28862761 (-) True G29409
TU33663 lncRNA upstream 106592 28873572 ~ 28874071 (-) True G29421
XM_036975199.1 mRNA downstream 28340 28669810 ~ 28737308 (-) True hydin
XM_021597913.2 mRNA downstream 28347 28663539 ~ 28737301 (-) False hydin
XM_021597922.2 mRNA downstream 28347 28663539 ~ 28737301 (-) False hydin
XM_036975166.1 mRNA downstream 104195 28535157 ~ 28661453 (-) True necab2
XM_036975159.1 mRNA downstream 104197 28535157 ~ 28661451 (-) False necab2
XM_021597978.2 mRNA upstream 27186 28794166 ~ 28830946 (-) False LOC110520584
XM_021597987.2 mRNA upstream 27186 28794166 ~ 28830947 (-) True LOC110520584
XM_021598007.2 mRNA upstream 68298 28835278 ~ 28841685 (-) False LOC110520608
XM_036975304.1 mRNA upstream 68298 28835278 ~ 28841690 (-) False LOC110520608
XM_021598056.2 mRNA upstream 68298 28835278 ~ 28841692 (-) False LOC110520608
TU33578 other downstream 61292 28703887 ~ 28704356 (-) True G29355
TU33049 other downstream 699343 28057443 ~ 28066305 (-) True G28870
TU33047 other downstream 703198 28057443 ~ 28062450 (-) False G28870
TU32221 other downstream 1122528 27636088 ~ 27643120 (-) True LOC110520292
TU28962 other downstream 3483630 25281604 ~ 25282018 (-) True G25117
TU34164 other upstream 513296 29280276 ~ 29280700 (-) True G29906
TU37184 other upstream 2364913 31131893 ~ 31132891 (-) True LOC110520932
TU37405 other upstream 2659143 31426123 ~ 31444949 (-) True LOC110521048
TU37804 other upstream 3217791 31984771 ~ 31986150 (-) False G33386
TU39673 other upstream 4340139 33107119 ~ 33108497 (-) True G35075

Expression Profile