RNA id: TU33613


Basic Information

Item Value
RNA id TU33613
length 1274
lncRNA type inter_gene
GC content 0.39
exon number 1
gene id G29376
representative True

Chromosome Information

Item Value
chromosome id NC_048565.1
NCBI id CM023219.2
chromosome length 95772356
location 28833569 ~ 28834943 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

GTTGTACAACTTTGGTGGACCTGTCACTGTATGCTGTCATTCGTAGGCTACTGTCTGTGGTCTTGATTAagctacactacatggccaaaagtttgtcgaacatctcattccaaaatcatgggcattaatatggagttggtccctcctttgctgctataacagcctccactcttctgggaaggctttccactagatgttggaacattactgtggGGACTTTCtttcggcgttccaattcatcccaaaggtgttcaaaggggttgaggtcagggctctgtgcaggccagtcaaatttttacacaccgatcttgacaaaccatttctgtatggaccttgctttgtgcatgggggcattatcgtgttgaaacaggaaaataccttcctcaaactgtttccacaaagatggaagcacagaatcgtcaagaatgtcattgtatgctgtagcgttaagatttcccttcactggaactaaggggcctagcctgaatcatggaaaaacagccccagatcattattcctcctccaccaaactttacagtggccactatgcattcgagcaggtagcgttctcctggcatccgccaaacccatgtTCCGTTGGACTGCAGAGAACATGTTTTCGCTGCTCCAGAGTCGAATTGCAgcaagttttacaccactccagccgacgcttggcgttGCACCTGGTGATCTTAGgcatgtgtgcggctgctcggcaatggaaacccatttcatgatgctcctGACAAACCGTTATTGTGCTTCCGTTGCTTGCAAAGGcggtttggaactcagtagtcaGTATCTCCTCGGTTGCAAAACTatttttatgcgcttcagcactcagcggtcccattctgtgagcttgtatggcctaccactttgcaattgttgctcctagacatttccacttcacaataacagcacttacagttgcccggggaagctctagcagggcagaaatgttatTAAATGATTCgttggaaaggtggcaccctatgacggtgccatgttgaaagtcactgagctcttcagtacaggccattctactggcaatgtttgtctatggagattgcatggctatgctcaattttattcacctgtcagcaatgggtgtggctgaaataggcaAATCCACTatttttaaggggtgtccacatacttttggtcatgtagtgtacctttTTGAGTTGCTTGTATAATGTTGAGAATTACAGTTGAATTTCATATATATGGCTGTGCATTCTATAACTTAATGTATGTAATTCTTAACA

Function

GO: NA

KEGG:

id description

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU33637 lncRNA downstream 2179 28831269 ~ 28831491 (-) True G29395
TU33622 lncRNA downstream 66690 28765648 ~ 28766980 (-) True G29380
TU33623 lncRNA downstream 68127 28764298 ~ 28765543 (-) True G29381
TU33620 lncRNA downstream 70007 28749977 ~ 28763663 (-) True G29378
TU33626 lncRNA downstream 84164 28748312 ~ 28749506 (-) True G29384
TU33651 lncRNA upstream 27314 28862257 ~ 28862761 (-) True G29409
TU33663 lncRNA upstream 38629 28873572 ~ 28874071 (-) True G29421
TU33676 lncRNA upstream 45999 28880942 ~ 28881152 (-) True G29434
TU33851 lncRNA upstream 62933 28897876 ~ 28898094 (-) True G29603
TU33855 lncRNA upstream 70520 28905463 ~ 28906336 (-) True G29607
XM_021597987.2 mRNA downstream 2723 28794166 ~ 28830947 (-) True LOC110520584
XM_021597978.2 mRNA downstream 2724 28794166 ~ 28830946 (-) False LOC110520584
XM_036975199.1 mRNA downstream 96362 28669810 ~ 28737308 (-) True hydin
XM_021597913.2 mRNA downstream 96369 28663539 ~ 28737301 (-) False hydin
XM_021598007.2 mRNA upstream 335 28835278 ~ 28841685 (-) False LOC110520608
XM_036975304.1 mRNA upstream 335 28835278 ~ 28841690 (-) False LOC110520608
XM_021598056.2 mRNA upstream 335 28835278 ~ 28841692 (-) False LOC110520608
XM_021598015.2 mRNA upstream 335 28835278 ~ 28841812 (-) False LOC110520608
XM_021598024.2 mRNA upstream 335 28835278 ~ 28841920 (-) False LOC110520608
TU33578 other downstream 129314 28703887 ~ 28704356 (-) True G29355
TU33049 other downstream 767365 28057443 ~ 28066305 (-) True G28870
TU33047 other downstream 771220 28057443 ~ 28062450 (-) False G28870
TU32221 other downstream 1190550 27636088 ~ 27643120 (-) True LOC110520292
TU28962 other downstream 3551652 25281604 ~ 25282018 (-) True G25117
TU34164 other upstream 445333 29280276 ~ 29280700 (-) True G29906
TU37184 other upstream 2296950 31131893 ~ 31132891 (-) True LOC110520932
TU37405 other upstream 2591180 31426123 ~ 31444949 (-) True LOC110521048
TU37804 other upstream 3149828 31984771 ~ 31986150 (-) False G33386
TU39673 other upstream 4272176 33107119 ~ 33108497 (-) True G35075

Expression Profile